Some hyperthermophilic heterotrophs in the genus Thermococcus produce H in the absence of S° and have up to seven hydrogenases, but their combined physiological roles are unclear. Here, we show which hydrogenases in Thermococcus paralvinellae are affected by added H during growth without S°. Growth rates and steady-state cell concentrations decreased while formate production rates increased when T. paralvinallae was grown in a chemostat with 65 µM of added H . Differential gene expression analysis using RNA-Seq showed consistent expression of six hydrogenase operons with and without added H . In contrast, expression of the formate hydrogenlyase 1 (fhl1) operon increased with added H . Flux balance analysis showed H oxidation and formate production using FHL became an alternate route for electron disposal during H inhibition with a concomitant increase in growth rate relative to cells without FHL. T. paralvinellae also grew on formate with an increase in H production rate relative to growth on maltose or tryptone. Growth on formate increased fhl1 expression but decreased expression of all other hydrogenases. Therefore, Thermococcus that possess fhl1 have a competitive advantage over other Thermococcus species in hot subsurface environments where organic substrates are present, S° is absent and slow H efflux causes growth inhibition.