Abstract. Coastal flooding in the Yucatan Peninsula is mainly associated with storm surge events triggered by high-pressure cold fronts systems passing through the Gulf of Mexico. To assess coastal flood hazards, this study uses a thirty-year water level hindcast, and considers the contribution of wave setup and the role of tidal hydrodynamics. To diagnose the mechanisms controlling 10 the water levels, extreme sea level occurrence probability at Progreso Port was performed to identify the two worst storms in terms of maximum residual tide (Event A), and maximum water level (Event B). Numerical results suggest that during Event A the wave setup contribution reaches 0.35 m at the coast and 0.17 m inside the back-barrier lagoon, while these values are smaller for Event B (0.30 m and 0.14m, respectively). Besides, numerical results of the effect of the astronomical tidal phase on the wave set-up and the residual sea level show that: (i) the wave set-up is tidally modulated and contributes up to 14% to the extreme water levels at 15 the inlet, (ii) the residual tide is larger (smaller) during near-low (high) or receding (rising) tide, and (iii) maximum flooding occurs when the storm peak coincides with rising or high tide, despite micro-tidal conditions.