Angiotensin-converting enzyme (ACE) in vertebrates is a zinc metallopeptidase involved in the release of angiotensin II and the inactivation of bradykinin, two peptide hormones that play a key role in blood pressure regulation and renal and cardiovascular function [1][2][3][4]. ACE inhibitors have been on the market for more than 20 years, with successful applications for conditions ranging from mild hypertension to postmyocardial infarction [5,6]. Somatic ACE is a very unusual enzyme which contains two active sites on the same polypeptide chain [7]. Since this discovery, there has been much speculation about the functional significance of the presence of two active sites in the same enzyme [8][9][10][11][12][13]. At the biochemical level, the presence of two active sites in the same enzyme has hampered the full characterization of substrate and inhibitor selectivity of somatic ACE. To circumvent these limitations, mutants of human ACE containing a single functional active site [14,15] or isolated ACE domains have been utilized to perform these studies [10,11]. Alternative approaches to study directly the properties of both domains in somatic form of ACE are still lacking. The development of the first highly N-domain-specific inhibitor, RXP407 [16], and the recent identification of a C-domain-specific inhibitor, RXPA380 [13], of human ACE may provide such an alternative strategy for studying inhibitor and substrate selectivity of any form of somatic ACE (Scheme 1). To demonstrate its interest, this approach was used to study the selectivity of somatic ACE purified from Somatic angiotensin-converting enzyme (ACE) contains two homologous domains, each bearing a functional active site. Studies on the selectivity of these ACE domains towards either substrates or inhibitors have mostly relied on the use of mutants or isolated domains of ACE. To determine directly the selectivity properties of each ACE domain, working with wildtype enzyme, we developed an approach based on the combined use of N-domain-selective and C-domain-selective ACE inhibitors and fluorogenic substrates. With this approach, marked differences in substrate selectivity were revealed between rat, mouse and human somatic ACE. In particular, the fluorogenic substrate Mca-Ala-Ser-Asp-Lys-DpaOH was shown to be a strict N-domain-selective substrate of mouse ACE, whereas with rat ACE it displayed marked C-domain selectivity. Similar differences in selectivity between these ACE species were also observed with a new fluorogenic substrate of ACE, Mca-Arg-Pro-Pro-Gly-Phe-Ser-Pro-DpaOH. In support of these results, changes in amino-acid composition in the binding site of these three ACE species were pinpointed. Together these data demonstrate that the substrate selectivity of the N-domain and C-domain depends on the ACE species. These results raise concerns about the interpretation of functional studies performed in animals using N-domain and C-domain substrate selectivity data derived only from human ACE.Abbreviations ACE, angiotensin-converting enzyme; DpaOH...