Proteasomes are critical for the processing of antigens for presentation through the major histocompatibility complex (MHC) class I pathway. HIV-1 Gag protein is a component of several experimental HIV-1 vaccines. Therefore, understanding the processing of HIV-1 Gag protein and the resulting epitope repertoire is essential.
Purified proteasomes from mature dendritic cells (DC) and activated CD4؉ T cells from the same volunteer were used to cleave full-length Gag-p24 protein, and the resulting peptide fragments were identified by mass spectrometry. Distinct proteasomal degradation patterns and peptide fragments were unique to either mature DC or activated CD4 ؉ T cells. Almost half of the peptides generated were cell type specific. Two additional differences were observed in the peptides identified from the two cell types. These were in the HLA-B35-Px epitope and the HLA-B27-KK10 epitope. These epitopes have been linked to HIV-1 disease progression. Our results suggest that the source of generation of precursor MHC class I epitopes may be a critical factor for the induction of relevant epitope-specific cytotoxic T cells.For the effective elimination of pathogens, antigens must be processed and presented through either the major histocompatibility complex (MHC) class I or the MHC class II pathway. The antigenic peptides generated within these two pathways stimulate CD8 ϩ and CD4 ϩ T cells, respectively (66). Exogenous antigens transported from phagolysosomes into the cytosol (1) and endogenous antigens within the cytosol are proteolytically cleaved by a series of proteases (32,33,51,52,56,65,71) before transportation into the endoplasmic reticulum via the transporter associated with antigen processing. The peptides are further trimmed by endoplasmic reticulum aminopeptidase (53) before binding to empty MHC class I molecules (12,26,49). The peptide-bound MHC class I molecules are transported to the cell surface for interaction with CD8 ϩ T cells. The recognition of the 8-to 10-amino-acid peptide sequence bound to MHC class I molecules allows cytotoxic T lymphocytes (CTLs) to monitor the environment for the presence of foreign peptide antigens (57).One of the main proteases involved in the genesis of class I peptides is the proteasome complex, which is thought to be responsible for the vast majority of the MHC class I precursor epitopes (34). Depending on the activation status of the cell, proteasomes occur in two forms; the constitutive proteasome found in all cell types and the immunoproteasome found in cells following activation with gamma interferon (IFN-␥) (32,33,59). A proteasome is a barrel-shaped complex consisting of 4 rings containing 7 subunits: alpha rings (subunits ␣1 to ␣7) on the outside and beta rings (subunits 1 to 7) on the inside (25, 40). The three active subunits, 1, 2, and 5 in the constitutive proteasome, are replaced by the inducible subunits 1i, 2i, and 5i to form the immunoproteasomes, resulting in an alteration in proteolytic activity (7,15,17,24,47). The role of the inducible subu...