Coronavirus nucleoproteins (N proteins)
Infectious bronchitis virus (IBV), a member of the Coronavirus genus of the Coronaviridae family, order Nidovirales (13), is an enveloped virus with a single-stranded, positive-sense RNA genome of 27,608 nucleotides (9) that is 5Ј capped and 3Ј polyadenylated which replicates in the cytoplasm of infected cells. The 5Ј two-thirds of the IBV genome encodes the replicase-transcription complex, Rep1a and Rep1ab, the latter resulting from a Ϫ1 frameshift (10). During IBV replication, a 3Ј-coterminal nested set of six subgenomic mRNAs are synthesized that encode other viral proteins, including nucleoprotein (N protein). Recently, we have reported that IBV N protein localizes to the cytoplasm and a structure in the nucleus proposed to be the nucleolus both in IBV-infected cells and in cells transfected with a plasmid expressing IBV N protein under the control of a PolII promoter (26), a result subsequently confirmed in species-specific and -nonspecific cells expressing the mouse hepatitis virus (MHV) and porcine transmissible gastroenteritis virus (TGEV) N proteins (64).The nucleolus is only present during interphase in mammalian cells (1) and is formed around ribosomal DNA repeats, which cluster at chromosomal loci called nucleolar organizer regions. It is the site where 5.8S, 18S, and 28S rRNAs are transcribed, processed, and assembled into ribosome subunits (11, 51). The nucleolus also sequesters regulatory complexes and has been implicated in the regulation of the cell cycle, telomerase activity, signal recognition particle biogenesis, small RNA processing, and mRNA transport (40, 41). The nucleolus is a dynamic structure composed of (or contains) at least 271 proteins (4), including nucleolin, fibrillarin, spectrin, B23, and the ribosomal proteins S5 and L9 (12, 51). Nucleolin (also called C23) represents 10% of the total nucleolar protein content, is highly phosphorylated and methylated, and also can be ADP-ribosylated (21). One of the main functions of nucleolin is processing the first cleavage step of rRNA in the presence of U3 snoRNP (21). Nucleolin may also function as a chaperone for correct folding in pre-rRNA processing (2). Fibrillarin is highly conserved in sequence, structure, and function in eukaryotes (5) and is directly involved in many posttranscriptional processes, including pre-rRNA processing, pre-rRNA methylation, and ribosome assembly (60).As a consequence of infection, a number of viral proteins interact with the nucleolus and can reorganize nucleolar antigens (25), with examples from retroviruses, DNA viruses, and RNA viruses. These include human immunodeficiency virus type 1 (HIV-1) Rev (16) and tat (56), Newcastle disease virus matrix protein (42), adenovirus IVa2 gene product (37) and V protein (39), Marek's disease virus MEQ protein (36), hepatitis D virus large-delta antigen (54), and porcine reproductive and respiratory syndrome virus nucleocapsid protein (49). The nucleolus is also the site of Borna disease virus replication and transcription (47...