Authentic simian virus 40 (SV40) has been detected in association with human choroid plexus and ependymoma tumors, and SV40-like DNA sequences have been found in some human osteosarcomas. We report here an analysis of human osteosarcoma samples for the presence of SV40 DNA using PCR and primers directed at 4 distinct sites of the SV40 genome, coupled with sequence analysis. Authentic SV40 DNA sequences were detected in 5 of 10 osteosarcoma tumor samples. The SV40 regulatory region in each case was identical and of archetypal length (non-duplicated enhancer), as is usually found in natural isolates of SV40 from monkeys and in human brain tumors. A section of the gene that encodes a viral late gene product (VP1) was detected in 5 of 10 tumors and had an exact match with the known sequence of SV40. Two separated segments of the large T-antigen (T-ag) gene were found in the same 5 tumors. Analysis of the DNA sequences encoding the T-ag carboxy terminus revealed sequence variation among the tumors, as observed previously in viral DNA associated with human brain tumors. There does not appear to be a preferential association of a T-ag variable domain sequence with a given tumor type. No sequences from the regulatory region of human polyomaviruses JCV and BKV were detected in the bone tumors. We also noted less efficient recovery of SV40 DNA from tumor samples fixed in paraffin as compared to frozen tumors. Our results confirm the presence of SV40 DNA in human bone tumors and, based on the sequence variation observed for the carboxy terminus of the T-ag gene, suggest that there is not a specific SV40 strain associated with human osteosarcomas. Int. J. Cancer 72:791-800, 1997.1997 Wiley-Liss, Inc.Simian virus 40 (SV40) is a small virus containing closed circular double-stranded DNA with limited genetic content (Butel, 1994; Cole, 1996). It was discovered as a contaminant of poliovaccines propagated in rhesus monkey kidney cells. SV40 is endemic in rhesus monkeys, the natural hosts for the virus, where it usually produces no recognizable pathology. Shortly after its discovery, SV40 was demonstrated to be oncogenic in newborn hamsters, in the African rodent Rattus natalensis and in certain inbred strains of mice. Subsequently, it was shown that the virus could transform and immortalize human and mouse cells grown in tissue culture. As millions of people had been exposed to SV40 in contaminated virus vaccines (for reviews, see Geissler, 1990;Shah and Nathanson, 1976), there was concern that the virus might be pathogenic in humans; SV40 was studied intensively and became an outstanding model for experimental studies of viral oncogenesis.There is mounting evidence that SV40-like sequences are associated with specific types of human tumors. In the older literature, there were sporadic reports of the detection of SV40 DNA in human tumors (reviewed in Geissler, 1990). More recent studies have used sensitive PCR technology and have detected the presence and expression of SV40-related sequences in pediatric ependymoma and choroid ...