has been shown to affect several aspects of cell behavior and function. [3] Therefore, it is expected that functional in vitro assays will switch from 2D to 3D in the near future, for a more faithful reconstruction of physiological conditions. [4] To keep pace with these expectations, engineered culture systems able to host and control 3D cell culture are urged to meet and surpass the standards of efficiency and throughput of current 2D culture systems.Microfluidic devices are particularly suited to address this need: the limited size of 3D constructs cultured in miniaturized systems is ideal to provide uniform diffusion of nutrients and avoid formation of necrotic cores. Single or cocultured cell-laden hydrogels can be injected, cross linked, and cultured inside microfluidic channels thanks to confining structures such as pillars or phase-guides that delimit the hydrogel region and leave gaps through which culture medium hydrates the constructs. [5][6][7] Such solutions have made hydrogel-based 3D cultures advantageous compared to spheroid culture, due to the greater control on the extra-cellular environment (e.g., chemistry and stiffness of surrounding matrix) and on the medium perfusion through dedicated side channels. Several physiological models built on microfluidic hydrogel cultures have been indeed described including heart microtissues, [8] perfusable vascular structures, [9][10][11] brain, [12] and liver [13] models.These and similar approaches have gained significant momentum in the scientific community establishing the emerging organs-on-a-chip, [14] advanced human in vitro physiological models that hold promise for substituting or complementing animal tests in preclinical research. [15] Microfluidic devices designed to host 3D cell cultures are however far from being the new standard as they still suffer from drawbacks. For instance, they are mostly operated as single-replicate chips: each device requires the user to mix hydrogel components with cellular material, inject the hydrogel mix in the device, trigger cross-linking, and supply culture medium with additional injections. This is highly incompatible with large experimental processes demanding high-throughput and high replicate numbers (e.g., preclinical in vitro drug screenings). The need for parallelization is paramount to allow quick screenings of multiple Microfluidic-based 3D cell culture and organs-on-chip have proved able to generate accurate in vitro models of human physiology. Their widespread application and adoption are however hampered by limited scalability and throughput. Here, a novel strategy is described to significantly enhance the throughput of microfluidic systems for 3D cell culture and organs-on-chips. A series of 3D culture chambers (up to 96 replicates) can be seeded with a single pipetting operation and a system of normally closed microfluidic valves ensures the resulting 3D microtissues are independent. Devices fabricated with this design principle are employed to perform 3D cultures of rat cardiac fibroblasts and profi...