Pathogen spectrum of Hand, foot and mouth disease (HFMD) has
substantially changed in the past decade. How do the co-circulating
pathogens interact and the coronavirus disease 2019 (COVID-19) intervene
the incidence of HFMD remain unclear. Here, we evaluated the virus-virus
interaction (VVI) of EVs using Spearman’s Correlation in Nanchang,
China. And the impact of COVID-19 intervention on HFMD incidence was
estimated using seasonal autoregressive integrated moving average
(ARIMA) models. Enterovirus (EV) serotypes were determined by RT-PCR.
From 2019 to 2022, 1321 (57.5%) out of 2296 HFMD cases were
EV-positive, in which coxsackievirus A6 (CVA6) and CVA16 were the major
pathogens, accounting for 34.0%-59.6% and 14.9%-31.4%, respectively.
Our analyses provide strong statistical support for the existence of
VVIs among enteroviruses, in which CVA6 negatively interacted with CVA16
and EV-A71, and positive VVI between CVA16 and EV-A71 was observed.
While CVA6 has a (albeit inconsistent) seasonal pattern in Nanchang,
typically peaking in fall-winter months before COVID-19 epidemic, CVA16
and EV-A71 contemporaneously peaks around May, supporting the
epidemiological VVIs among these strains. During the COVID-19 epidemic,
the seasonal HFMD epidemic peak was restrained, indicating the COVID-19
intervention had mitigated EV transmission. Moreover, we first figured
out the serotypes from other enteroviruses, among them CVA4, CVA2, CVA5
and CVB3 were the major agents accounting for 34.8%, 23.9%, 23.9% and
10.9%, respectively. Taken together, CVA6 and CVA16 were currently the
most predominant pathogens negatively interacted with each other in
Nanchang, while NPIs of COVID-19 outbreaks interfered the interactions
by mitigating their incidence and transmission.