2022
DOI: 10.1021/acs.jpcb.1c08603
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How Far Is “Bulk Water” from Interfaces? Depends on the Nature of the Surface and What We Measure

Abstract: Using systematic molecular dynamics (MD) simulations, we revisit the question: At what distance from an interface do the properties of "bulk water" get recovered? We have considered three different kinds of interfaces: nonpolar (hydrophobic; isooctane−water interface), charged (negative; AOT bilayer), and polar (zwitterionic; POPC bilayer). In order to interrogate the extent of perturbation of the interfacial water molecules as a function of the distance from the interface, we utilize a diverse range of struct… Show more

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Cited by 15 publications
(25 citation statements)
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References 64 publications
(92 reference statements)
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“…( Gawrisch et al, 1978 ; Volkov et al, 2007a ; Volkov et al, 2007b ; Disalvo et al, 2008 ; Zhao et al, 2008 ; Beranova et al, 2012 ; Cheng et al, 2014 ; Pokorna et al, 2014 ), although more detailed information about its properties has been provided by computer modelling, e.g. ( Rog et al, 2009 ; Berkowitz and Vacha, 2012 ; Disalvo et al, 2014 ; Nickels et al, 2015 ; Pasenkiewicz-Gierula et al, 2016 ; Laage et al, 2017 ; Elola and Rodriguez, 2018 ; Martelli et al, 2018 ; Srivastava and Debnath, 2018 ; Tian and Chiu, 2018 ; Calero and Franzese, 2019 ; Kucerka et al, 2019 ; Srivastava et al, 2019 ; Deplazes et al, 2020 ; Luo et al, 2020 ; Szczelina et al, 2020 ; Hande and Chakrabarty, 2022 ).…”
Section: Introductionmentioning
confidence: 99%
“…( Gawrisch et al, 1978 ; Volkov et al, 2007a ; Volkov et al, 2007b ; Disalvo et al, 2008 ; Zhao et al, 2008 ; Beranova et al, 2012 ; Cheng et al, 2014 ; Pokorna et al, 2014 ), although more detailed information about its properties has been provided by computer modelling, e.g. ( Rog et al, 2009 ; Berkowitz and Vacha, 2012 ; Disalvo et al, 2014 ; Nickels et al, 2015 ; Pasenkiewicz-Gierula et al, 2016 ; Laage et al, 2017 ; Elola and Rodriguez, 2018 ; Martelli et al, 2018 ; Srivastava and Debnath, 2018 ; Tian and Chiu, 2018 ; Calero and Franzese, 2019 ; Kucerka et al, 2019 ; Srivastava et al, 2019 ; Deplazes et al, 2020 ; Luo et al, 2020 ; Szczelina et al, 2020 ; Hande and Chakrabarty, 2022 ).…”
Section: Introductionmentioning
confidence: 99%
“…In the previous formula, t is time and dt is the integration timestep, while ξ x , ξ y and ξ z are random variables distributed according to a Gaussian function with zero average and unit variance. Although molecular dynamics simulations indicate that diffusion in parallel and perpendicular directions to the lipid/water interface are distinct [8,39], for simplicity in Eq. ( 3) we consider, for a given position, the same diffusion coefficient for the random movement in any direction.…”
Section: Brownian Dynamicsmentioning
confidence: 99%
“…Theoretical considerations and computational simulations can provide a complementary insight into these systems, due to their faster and cheaper implementation, but also because they allow to address the effect of the various factors one at a time, which is not always possible in experiments. Although there is a vast literature focused on the modelling of diffusion in confined environments [34,35] and on the exotic water mobility at the interface with hydrophilic objects [36][37][38][39], little work has studied these topics within the context of lipid mesophases [8,28,29,40].…”
Section: Introductionmentioning
confidence: 99%
“…There is no abrupt physical boundary between the PHL and bulk water, and the answer to that question depends on the quantity (or observable) that is probed and on the technique used. 69 , 70 While some techniques, such as NMR, probe single-particle dynamics and are most sensitive to short-ranged interactions with the first hydration layer, other methods such as terahertz spectroscopy probe the collective response of water molecules in an extended H-bonded network and thus longer-ranged effects. 71 The modulations of the structure and dynamics of the PHL result from a combined effect of different local interactions between the protein surface and water molecules, and thus a more detailed picture would be desirable.…”
Section: Introductionmentioning
confidence: 99%
“…In contrast, the protein hydration layer (PHL) that surrounds a protein is more loosely interacting with the surface and is characterized by a heterogeneous distribution of structural and dynamic properties. ,, The question up to what length scale the presence of a protein (or other biomolecular) surface perturbs the water around it has been a matter of debate in the literature. There is no abrupt physical boundary between the PHL and bulk water, and the answer to that question depends on the quantity (or observable) that is probed and on the technique used. , While some techniques, such as NMR, probe single-particle dynamics and are most sensitive to short-ranged interactions with the first hydration layer, other methods such as terahertz spectroscopy probe the collective response of water molecules in an extended H-bonded network and thus longer-ranged effects . The modulations of the structure and dynamics of the PHL result from a combined effect of different local interactions between the protein surface and water molecules, and thus a more detailed picture would be desirable.…”
Section: Introductionmentioning
confidence: 99%