We present a unified framework to simulate heat and mass transport in systems of particles. The proposed framework is based on kinematic mean field theory and uses a phenomenological master equation to compute effective transport rates between particles without the need to evaluate operators. We exploit this advantage and apply the model to simulate transport phenomena at the nanoscale. We demonstrate that, when calibrated to experimentally-measured transport coefficients, the model can accurately predict transient and steady state temperature and concentration profiles even in scenarios where the length of the device is comparable to the mean free path of the carriers. Through several example applications, we demonstrate the validity of our model for all classes of materials, including ones that, until now, would have been outside the domain of computational feasibility.Keywords: Nanoscale heat transport, Thermo-mechanical coupling, Mass diffusion in Solids, Finite temperature, Kinematic mean field theory.Nanoscale heat conduction is a subject of great interest due to its applications to the next-generation of nano-and micro-electronic devices, where the heat flux generated can be exceedingly large in comparison with that seen in the current generation of electronics [1,2]. Thus, it is of utmost importance to understand how heat is carried at these small scales. However, modeling and simulation of heat transport at the nanoscale is a complicated undertaking; the classical Fourier equation is no longer valid and common atomistic simulation techniques -such as molecular dynamics (MD) -are not able to model all classes of materials accurately. This is due to the fact that when the lengths of these devices become comparable to the mean free-path, the classical Fourier equation (FE) is no longer valid for predicting their behavior due to the fact that the heat carriers can scatter upon interaction with interfaces and defects, resulting in a lower conductivity than bulk materials [1,2,3]. As such, nanoscale thermal properties are intimately coupled to the distribution and * Corresponding author