Background and Purpose:
Researches on rare variants of
NOTCH3
in the general Chinese population are lacking. This study aims to describe the spectrum of rare
NOTCH3
variants by whole-exome sequencing in a Chinese community-based cohort and to investigate the association between rare
NOTCH3
variants and age-related cerebral small vessel disease.
Methods:
The cross-sectional study comprised 1065 participants who underwent whole-exome sequencing and brain magnetic resonance imaging.
NOTCH3
variants with minor allele frequency<1% in all 4 public population databases (1000 Genomes, ESP6500siv2_ALL, GnomAD_ALL, and GnomAD_EAS) were defined as rare variants. Multivariable linear and logistic regressions were used to investigate the associations between rare
NOTCH3
variants and volume of white matter hyperintensities and cerebral small vessel disease burden. Clinical and imaging characteristics of rare
NOTCH3
variant carriers were summarized.
Results:
Sixty-five rare
NOTCH3
variants were identified in 147 of 1065 (13.8%) participants, including 57 missense single nucleotide polymorphisms (SNPs), 5 SNPs in splice branching sites, and 3 frameshift deletions. A significantly higher volume of white matter hyperintensities and heavier burden of cerebral small vessel disease was found in carriers of rare
NOTCH3
EGFr (epidermal growth factor-like repeats)-involving variants, but not in carriers of EGFr-sparing variants. The carrying rate of rare EGFr-involving
NOTCH3
variants in participants with dementia or stroke was significantly higher than those without dementia or stroke (12.4% versus 6.6%,
P
=0.041). Magnetic resonance imaging signs suggestive of CADASIL were found in 3.4% (5/145) rare EGFr cysteine-sparing
NOTCH3
variant carriers but not in 2 cysteine-altering
NOTCH3
variant carriers.
Conclusions:
Carriers of rare
NOTCH3
variants involving the EGFr domain may be genetically predisposed to age-related cerebral small vessel disease in the general Chinese population.