“…Analysis of global gene expression signatures using 'Gene Set Enrichment Analysis' (GSEA)(Subramanian et al, 2005) identified a significant enrichment of molecular signatures related to EMT, adherens and tight junctions in the EGFP + fraction, characteristic of the SOX2 + population(Figure 3figure supplement 1B). The SOX2 + fraction also displayed enrichment for genes associated with several signalling pathways known to be active in these cells, including EGFR (Iwai-Liao et al, 2000), Hippo(Lodge et al, 2016;Lodge et al, 2019;Xekouki et al, 2019), MAPK(Haston et al, 2017), FGF(Higuchi et al, 2017), Ephrin(Yoshida et al, 2015;Yoshida et al, 2017) and p53 (Gonzalez-Meljem et al, 2017) (Figure 3figure supplement 1C, Supplementary File 1). Additionally, PI3K, TGF and BMP pathway genes were significantly enriched in the SOX2 + population(Figure 3figure supplement 1C, Supplementary File 1).…”