High-throughput Siderophore Screening from Environmental Samples: Plant Tissues, Bulk Soils, and Rhizosphere Soils

Lewis, Ricky W.; Islam, Anjuman A.; Dilla-Ermita, Christine Jade; Hulbert, Scot H.; Sullivan, Tarah S.

doi:10.3791/59137-v

Cited by 1 publication

(1 citation statement)

References 0 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Despite bacteria communities of genus level can be verified by conserved regions analysis in 16 S rRNA hypervariable regions, detailed composition on endosymbiont at species level comprised of bacteria, archaea, and Eukaryota and function characteristics are still needed. High-throughput metagenome sequencing technology can provide new views from a nearly complete composition of endosymbiont communities 11 .…”

Section: Background and Summarymentioning

confidence: 99%

Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont

Pan

Liu

et al. 2023

Sci Data

View full text Add to dashboard Cite

Asian citrus psyllid (Diaphorina citri, D. citri) is the important vector of “Candidatus Liberibacter asiaticus” (CLas), associated with Huanglongbing, the most devastating citrus disease worldwide. CLas can affect endosymbiont abundance of D. citri. Here, we generated the high-quality gut endosymbiont metagenomes of Diaphorina citri on the condition of CLas infected and uninfected. The dataset comprised 6616.74 M and 6586.04 M raw reads, on overage, from CLas uninfected and infected psyllid strains, respectively. Taxonomic analysis revealed that a total of 1046 species were annotated with 10 Archaea, 733 Bacteria, 234 Eukaryota, and 69 Viruses. 80 unique genera in CLas infected D. citri were identified. DIAMOND software was used for complement function research against various functional databases, including Nr, KEGG, eggNOG, and CAZy, which annotated 84543 protein-coding genes. These datasets provided an avenue for further study of the interaction mechanism between CLas and D. citri.

show abstract

Section: Background and Summarymentioning

confidence: 99%