Polyol derived from soybean oil was used as a natural source preparation to create an environmentally friendly polyurethane foam. In order to stiffen these foams, wood fibers were added to provide reinforcement at low cost, while preserving the environmental friendly nature of the material. Mixing is a crucial step in the manufacture of reinforced foams and determines the fiber distribution and cell structure and hence the performance of the material. In this study, the effect of stirring variables on the mechanical properties of polyurethane foams was investigated and foams made using hand mixing were compared to foams made with a mechanical stirrer. Cell morphologies of the reinforced foams were characterized using scanning electron microscopy, X-ray computed tomography, and 3D stereo microscopy. The mechanical performance of the reinforced foam was essentially independent of stirring time and mainly depended on the variation in stirring rate. For foams made with high fiber fractions using a mechanical stirrer, the fibers were not as effective in increasing the compressive strength and modulus as they were in foams prepared by hand stirring. This suggests that mechanical stirring causes damage to the fibers, particularly at high fiber content.