We used P transposable-element mobilization to study the repair of double-strand DNA breaks in Drosophila melanogaster premeiotic germ cells. Distribution of conversion tracts was found to be largely unaffected by changes in the length of sequence homology between the broken ends and the template, suggesting that only a short match is required. However, the frequency of repair was highly sensitive to single-base mismatches within the homologous region, ranging from 19% reversion when there were no mismatches to 5% when 15 mismatches were present over a 3455-bp span.Efficient recombination between two stretches of DNA requires that the two sequences locate each other in the genome and form the stable recombinational intermediate complex. Some degree of homology between the two interacting sequences is needed for efficient recombination by most pathways (1).The questions of how long the stretch of homology must be and how closely the sequences must match within this stretch have been approached with various experimental systems in bacteria (2-5), yeast (6-8), and mammals (9-15). The general conclusion from these studies is that the recombination mechanisms are much more sensitive to degree of homology than would be predicted purely on the basis of DNA-duplex stability. In Escherichia coli, for example, a single-base mismatch in 53 bp resulted in a 4-fold reduction in recombination (4), and a 40-fold reduction was seen when the mismatch proportion was increased to 10% (3). The minimum length of homology required has been estimated at 20-50 bp for E. coli (2-4) and 63-89 bp for Saccharomyces cerevisiae (7). For mammalian cells, estimates range from 163 to 300 bp (9, 13), but some studies indicate efficient recombination with as little as 20 bp (9, 10). One suggestion (2, 5) is that the length and stringency of homology requirements reflect an evolutionary adaptation to prevent recombination between unrelated sites and are, thus, expected to depend on size and complexity of the genome.In this report we make use of the recently developed method of transposable-element-induced gap repair to address the question of homology requirements for recombinational DNA repair. P elements are DNA transposons that have been used for a variety oftechniques in Drosophila (16). Recent data (17-19) led to a model in which P element excision leaves behind a double-stranded DNA break. According to this interpretation, such breaks are often extended into various-sized gaps through exonuclease activity. Repair occurs when the ends of the gap invade a homologous DNA sequence from which to copy the missing genetic information. The result is unidirectional transfer of information from the template sequence to the excision site. The template can be the sister strand or an ectopic site located elsewhere in the genome or extrachromosomally (17,18,20).The system allows us to examine the length and stringency of homology requirements in Drosophila melanogaster. A further advantage of this approach is that recombination occurs between sequ...