In this work we investigated the hole electrical transporting properties effect on the organic-Si hybrid Schottky solar cells. By changing the post-annealing atmosphere of poly(3,4-ethylenedioxythiophene)/poly(styrenesulfonate) (PEDOT:PSS) film, the power conversion efficiencies of the Schottky Si/PEDOT:PSS cell boosted from 6.40% in air to 9.33% in nitrogen. Current-voltage, capacitance-voltage, external quantum efficiency, and transient photovoltage measurements illustrated that the enhanced power conversion efficiency of the cell was ascribed to the increase in both conductivity and work function (WP) of PEDOT:PSS film. The increased conductivity reduced the series resistance (RS) within the cell, and the higher WP generated the larger built-in potential (Vbi) which resulted in the improvement of the open-circuit voltage. In addition, the decreased RS and enlarged Vbi were beneficial for the efficient charge transport/collection, contributing to the enhancement of the fill factor. Our results indicated that the conductivity as well as the WP of the hole transporting layer played an important role in the organic-Si Schottky solar cell.