PURPOSE. Central corneal thickness (CCT) is a quantitative trait associated with keratoconusand primary open-angle glaucoma. Although CCT is highly heritable, known genetic variations explain only a fraction of the phenotypic variability. The purpose of this study was to identify additional CCT-influencing loci using inbred strains of mice.METHODS. Cohorts of 82 backcrossed (N2) and 99 intercrossed (F2) mice were generated from crosses between recombinant inbred BXD24/TyJ and wild-derived CAST/EiJ mice. Using anterior chamber optical coherence tomography, mice were phenotyped at 10 to 12 weeks of age, genotyped based on 96 genome-wide single nucleotide polymorphisms (SNPs), and subjected to quantitative trait locus (QTL) analysis.
RESULTS.In an analysis of total CCT among all mice, two loci passed the significance threshold of P ¼ 0.05. These were on Chr 3 and Chr 11 (Cctq4 and Cctq5, respectively). A third locus of interest was identified in a two-dimensional pairwise analysis; this locus on Chr 14 (Cctq6) exhibited a significant additive effect with Cctq5. Independent analyses of the dataset for epithelial and stromal thickness revealed that Cctq4 is specific to the epithelial layer and that Cctq5 and Cctq6 are specific to the stromal layer.CONCLUSIONS. Our findings demonstrate a quantitative multigenic pattern of CCT inheritance in mice and identify three previously unrecognized CCT-influencing loci: Cctq4, Cctq5, and Cctq6. This is the first demonstration that distinct layers of the cornea are under differential genetic control and highlights the need to refine the design of future genome-wide association studies of CCT.Keywords: quantitative traits, central corneal thickness, cornea, QTL analysis C entral corneal thickness (CCT) is a continuously distributed quantitative trait.1-4 As a sum of the thickness of the three corneal tissue layers (the epithelium, stroma, and endothelium), CCT remains relatively stable over time within individuals, but varies widely between individuals and ethnicities. [5][6][7][8][9][10] Extreme variations in CCT are often associated with rare connective tissue disorders such as brittle cornea syndrome and osteogenesis imperfecta, 11-15 whereas modest differences are associated with relatively common diseases such as keratoconus 16 and risk of primary open-angle glaucoma.
17-19Central corneal thickness is one of the most heritable human traits, with estimates of up to 0.95 reported. 2,3,14,[20][21][22] Despite this high heritability and the fact that CCT has been implicated in several human diseases, currently known genetic variations explain only a small fraction of this phenotypic variability. Of the genes known to influence the normal range of CCT variation, most were identified in human genome-wide association studies (GWAS). 13,16,[23][24][25] Several of the currently known CCT-influencing factors include genes that have an impact on collagen, 16,24,25 a major structural component of the stromal layer. Other CCT-influencing genes have unknown function, including ZNF469, a zi...