The hemoglobin variant South Florida has been shown by protein sequencing and fast-atom-bombardment mass spectroscopy to have a substitution ofmethionine for the NH2-terminal valine of the (8-globin chain. In addition, there was complete retention of the initiator methionine on the mutant polypeptide. Approximately 20% of the protein was acetylated at the NH2 terminus of the (3 chain. A search of a comprehensive data bank of protein and gene sequences revealed 84 unrelated vertebrate proteins that have not undergone cleavage of leader sequences. A highly nonrandom distribution of residues at the NH2 termini of these proteins predicts removal of the initiator methionine as well as NH2-terminal acetylation. Proteins that undergo removal commonly have serine, alanine, glycine, or valine, as the NH2-terminal residues. The first three residues favor N-acetylation. Proteins that retain the initiator methionine commonly have a charged residue or methionine at the second position. Information on Hb South Florida and other hemoglobins coupled with this survey of primary sequence provides insights into the NH2-terminal processing of proteins.The biological properties of a large number of proteins are significantly altered by cotranslational and posttranslational modifications. In eukaryotes, the initiation of translation takes place at an AUG codon on mRNA (1). The NH2-terminal methionine residue is generally cleaved from the nascent polypeptide by an aminopeptidase (2). Soon thereafter the new NH2-terminal residue is often acetylated at the a-amino group (3,4). Only fragmentary information on NH2-terminal processing is available and, therefore, the molecular mechanism is still poorly understood. It has been suggested that cleavage of the initiator methionine is prevented when the adjacent residue is a charged amino acid (5). The
MATERIALS AND METHODSPhosphate-free hemolysates (6) were prepared from heparinized blood samples. Hemolysate (1-2 g of hemoglobin) was analyzed on a column (5 x 22 cm) of Bio-Rex 70 (Bio-Rad) cation-exchange resin as described (7). The "Hb Al," fraction was dialyzed vs. 0.25 M ammonium acetate, pH 8.5, and rechromatographed on a column (2 x 6 cm) of Glycogel B boronate affinity resin (Pierce) (8). The non-retained Hb fraction from the affinity column and Hb A0 fraction from Bio-Rex chromatography were converted to globin by acid/acetone precipitation (9) and separated into a and /3 subunits by carboxymethyl-cellulose chromatography in 8 M urea. After aminoethylation (10), the isolated chains were digested with trypsin (11 Tryptic peptides were dissolved in 0.5% acetic acid/glycerol, 1:1 (vol/vol) solution. About 2 ,ug of the sample was applied per analysis.Abbreviations: FAB-MS, fast-atom-bombardment mass spectroscopy; RP-HPLC, reverse-phase HPLC.
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