The general properties of the heat shock response of the archaebacterium Methanococcus voltue were characterized. The induction of 11 heat shock proteins, with apparent molecular weights ranging from 18,000 to 90,000, occurred optmaly at 40 to 500C. Some of the heat shock proteins were preferentialy enriched in either the soluble (cytoplssm) or particulate (membrane) fraction. Alternative stresses (ethano, hydrogen peroxide, NaCI) stimulated the synthesis of subsets of the heat shock proteins as well as unique proteins. Western blot (inunuoblot) analysis, in which antisera to Escherichia co/i heat shock proteins (DtaK and GroEL) were used, did not detect any immunologkally cross-reactive proteins. In additin, Southem blot analysis did not reveal any homology between M. voltae and four higly conserved heat shock genes, mopB and dnaK from E. coli and hsp7O genes from Drosophia species and Saceharomyces cerevisiae.Most of the studies of archaebacteria have been concerned with their cytochemistry and physiology (8,10,25). Relatively little is known about the genomic organization, transcription, and regulation of gene expression in these microorganisms (5). Expression of genes easily modulated by environmental manipulations, such as the exposure of cells to rapid shifts in temperature (heat shock), would make ideal systems for studying transcriptional regulation. The heat shock response has been studied in numerous eukaryotes and eubacteria (4,(16)(17)(18)20), as well as in three archaebacteria (an extreme halophile, i.e., Halobacterium halobium [6], and the sulfur-dependent thermophiles Sulfolobus acidocaldarius [9] and Sulfolobus sp. strain B12 [23]). To date, this response has not been examined in any members of the methanogens. A general characteristic of the heat shock response is the rapid and usually transient induction of a limited number of proteins (heat shock proteins [HSPs]). In addition to the universal nature of this response, some of the HSPs exhibit high degrees of conservation across the eubacterial and eukaryotic kingdoms at both the amino acid and nucleotide levels (4). The heat shock phenomenon is very well studied (15,16,18,20) and provides an established framework to study gene expression in Methanococcus voltae.(Portions of this work were presented previously [7a, 7b].) M. voltae cells were grown at 30°C as previously described (11) except that Balch medium III (3) was modified to decrease the content of yeast extract and Trypticase 10-fold (to 0.2 g/liter each) and supplemented with the essential amino acids leucine and isoleucine (26) at 0.5 and 1.0 gfliter, respectively. To study heat shock in M. voltae, cell samples (1.0 ml) were dispensed and temperature equilibrated at 30°C before shifting to 45°C. The cells were radiolabeled for 4 min with 25 ,ul of a 2x-concentrated, uniformly labeled "`Camino acid mixture (50 p.CiIml;