Heat shock protein 90 participates in diverse biological processes ranging from protein folding, cell cycle, signal transduction and development to evolution in all eukaryotes. It is also critically involved in regulating growth of protozoa such as Dictyostelium discoideum, Leishmania donovani, Plasmodium falciparum, Trypanosoma cruzi, and Trypanosoma evansi. Selective inhibition of Hsp90 has also been explored as an intervention strategy against important human diseases such as cancer, malaria, or trypanosomiasis. Giardia lamblia, a simple protozoan parasite of humans and animals, is an important cause of diarrheal disease with significant morbidity and some mortality in tropical countries. Here we show that the G. lamblia cytosolic hsp90 (glhsp90) is split in two similar sized fragments located 777 kb apart on the same scaffold. Intrigued by this unique arrangement, which appears to be specific for the Giardiinae, we have investigated the biosynthesis of GlHsp90. We used genome sequencing to confirm the split nature of the giardial hsp90. However, a specific antibody raised against the peptide detected a product with a mass of about 80 kDa, suggesting a post-transcriptional rescue of the genomic defect. We show evidence for the joining of the two independent Hsp90 transcripts in-trans to one long mature mRNA presumably by RNA splicing. The splicing junction carries hallmarks of classical cis-spliced introns, suggesting that the regular cissplicing machinery may be sufficient for repair of the open reading frame. A complementary 26-nt sequence in the "intron" regions adjacent to the splice sites may assist in positioning the two pre-mRNAs for processing. This is the first example of post-transcriptional rescue of a split gene by trans-splicing.Whole genome sequencing has galvanized investigation of biological processes and host-pathogen interactions. Protozoan parasites cause life-threatening diseases in humans and animals accounting for hundreds of millions of deaths annually worldwide. In the last 10 years, the genome sequences of many important pathogens such as Giardia lamblia, Leishmania donovani, Plasmodium falciparum, Trichomonas vaginalis, and Trypanosoma cruzi have been completed (1-5) and have helped biological research toward development of new drug candidates. The first partial genome sequence of G. lamblia was reported in 2000 (4), and more recently, in 2007, the full genome sequence was published and is available on GiardiaDB (5). G. lamblia (syn. Giardia intestinalis, Giardia duodenalis) is an extracellular enteroparasite causing giardiasis, a diarrheal disease, in humans and animals. Initially thought to be a primitive eukaryote, G. lamblia turned out to be a highly simplified extracellular parasite that has undergone significant reductive evolution (6). The rapidly accumulating genomic and post-genomic data on Giardia and related genera now provide the necessary background to investigate complex biological processes in a comparative manner across species boundaries.Heat shock protein 90 (Hsp90)...