Harenicola maris gen. nov., sp. nov. isolated from the Sea of Japan shallow sediments

Romanenko, Lyudmila A.; Kurilenko, Valeriya V.; Chernysheva, Nadezhda; Tekutyeva, Liudmila; Velansky, P. V.; Svetashev, Vassilii I.; Isaeva, Marina

doi:10.1007/s00203-021-02360-0

Cited by 10 publications

(2 citation statements)

References 32 publications

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“…There are currently 90 species in this family, 60 of which are validly published and corrected names (https:/lpsn.dsmz.de/family/paracoccaceae). Most of the type species in the 60 effectively published and correctly named genera come from marine or marine-related organisms, including shallow sediment, deep-sea water, sea snails, coral, dinoflagellates, sea squirts, and others [3][4][5][6][7][8][9].…”

Section: Introductionmentioning

confidence: 99%

Gymnodinialimonas phycosphaerae sp. nov., a phycosphere bacterium isolated from Karlodinium veneficum

Peng

Jiang

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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A facultative anaerobic, Gram-negative, non-motile, rod-shaped bacterial strain, designated N5T, was obtained from the phycosphere microbiota of the marine planktonic dinoflagellate, Karlodinium veneficum. Strain N5T showed growth on marine agar at 25 °C, pH 7 and 1 % (w/v) NaCl and produced a yellow colour. According to a phylogenetic study based on 16S rRNA gene sequences, strain N5T has a lineage within the genus Gymnodinialimonas . The G+C content in the genome of strain N5T is 62.9 mol% with a total length of 4 324 088 bp. The NCBI Prokaryotic Genome Annotation Pipeline revealed that the N5T genome contained 4230 protein-coding genes and 48 RNA genes, including a 5S rRNA, 16S rRNA, 23S rRNA, 42 tRNA, and three ncRNAs. Genome-based calculations (genome-to-genome distance, average nucleotide identity and DNA G+C content) clearly indicated that the isolate represents a novel species within the genus Gymnodinialimonas . The predominant fatty acids were C19 : 0 cyclo ω8c and feature 8 (comprising C18 : 1 ω6c and/or C18 : 1 ω7c). The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine and phosphatidylcholine. The main respiratory quinone was Q-10. Based on its phenotypic, phylogenetic, genomic and chemotaxonomic features, strain N5T represents a novel species of the genus Gymnodinialimonas , for which the name Gymnodinialimonas phycosphaerae sp. nov. is proposed. The type strain is N5T (=KCTC 82362T=NBRC 114899T).

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Section: Introductionmentioning

confidence: 99%

Gymnodinialimonas phycosphaerae sp. nov., a phycosphere bacterium isolated from Karlodinium veneficum

Peng

Jiang

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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“…There were approximately 199 recognized genera in the family at the time of writing (https://lpsn.dsmz.de/family/rhodobacteraceae). More than 10 genera have been described in the last 5 years, including Aestuariicoccus [2], Aestuariibius [3], Acidimangrovimonas [4], Aliishimia [5], Histidinibacterium [6], Harenicla [7], Heliomarina [8], Mesobacterium [8], Meridianimarinicoccus [9], Carideicomes [10] and Pelagovum [11]. These species were isolated from diverse ecological environments, including tidal flat [2, 3], mangrove sediment [4], marine alga [6], hydrothermal field [10], marine sediment [7] and seawater [5, 8, 9, 11].…”

Section: Introductionmentioning

confidence: 99%

Limibaculum sediminis sp. nov., isolated from mangrove sediment

Huang

Liu

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

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A Gram-stain-negative, cream-coloured, aerobic, motile and ovoid- to rod-shaped bacterium, designated as FT325T, was isolated from mangrove sediment collected in Shenzhen, PR China. The taxonomic position of strain FT325T was established by phylogenetic, physiological, biochemical and chemotaxonomic analyses. Strain FT325T grew optimally at 37–40 °C and pH 6.0 in the presence of 0 % (w/v) NaCl. Results of 16S rRNA gene sequence analysis showed that strain FT325T was most similarly related to Limibaculum halophilum CAU 1123T (96.2 %), Phaeovulum vinaykumarii DSM 18714T (93.9%) and Amaricoccus solimangrovi HB 172011T (93.7 %). The major fatty acids (>10 %) were C18 : 1 ω7c (60.0 %) and 11-methyl C18 : 1 ω7c (16.7 %). The sole respiratory quinone was Q-10. The polar lipids were phosphatidylglycerol, one unidentified glycolipid, three unidentified aminolipids and three unidentified phospholipids. Its estimated genome size was 4 318 768 bp and the genomic DNA G+C content was 69.6 mol%. Based on its distinct phenotypic, chemotaxonomic and phylogenetic characteristics, strain FT325T represents a novel species of the genus Limibaculum , for which the name Limibaculum sediminis sp. nov. is proposed (=MCCC 1K07397T=KCTC 92313T).

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Genomic potential for inorganic carbon sequestration and xenobiotic degradation in marine bacterium Youngimonas vesicularis CC-AMW-ET affiliated to family Paracoccaceae

Hameed,

Suchithra,

Lin

et al. 2023

Antonie van Leeuwenhoek

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Harenicola maris gen. nov., sp. nov. isolated from the Sea of Japan shallow sediments

Cited by 10 publications

References 32 publications

Gymnodinialimonas phycosphaerae sp. nov., a phycosphere bacterium isolated from Karlodinium veneficum

Gymnodinialimonas phycosphaerae sp. nov., a phycosphere bacterium isolated from Karlodinium veneficum

Limibaculum sediminis sp. nov., isolated from mangrove sediment

Genomic potential for inorganic carbon sequestration and xenobiotic degradation in marine bacterium Youngimonas vesicularis CC-AMW-ET affiliated to family Paracoccaceae

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