2020
DOI: 10.1101/2020.03.26.009258
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HamHeat: A fast and simple package for calculating Hamming distance from multiple sequence data for heatmap visualization

Abstract: The problem of fast calculation of Hamming distance inferred from many sequence datasets is still not a trivial task. Here, we present HamHeat, as a new software package to efficiently calculate Hamming distance for hundreds of aligned protein or DNA sequences of a large number of residues or nucleotides, respectively. HamHeat uses a unique algorithm with many advantages, including its ease of use and the execution of fast runs for large amounts of data. The package consists of three consecutive modules. In th… Show more

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