Halomonas alimentaria sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.

Yoon, Jung Hoon; Lee, Keun Chul; Kho, Yung Hee; Kang, Kook Hee; Kim, Chul-Joong; Park, Yong Ha

doi:10.1099/00207713-52-1-123

Cited by 137 publications

(92 citation statements)

References 24 publications

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“…The fatty acid profile of strain SS20 T was characterized as containing saturated and unsaturated straight-fatty acids such as C 18 : 1 v7c, C 19 : 0 v8c cyclo and C 16 : 0 (Table 2). The fatty acid composition on MA was slightly different from that on MA supplemented with 5 % NaCl (w/v), as reported previously (Arahal et al, 2001;Bouchotroch et al, 2001;Franzmann & Tindall, 1990;Valderrama et al, 1998;Yoon et al, 2001Yoon et al, , 2002). However, the major fatty acid profile of strain SS20 T was similar to those of other members of the genus Halomonas, but was distinguishable from that of the genus Zymobacter, the closest phylogenetic neighbour Table 1.…”

supporting

confidence: 63%

“…70 67-68 60?7-64?2 6 3 6 2 ?2-64?1 60?5 6 6 ?7 6 5 ?7 (Arahal et al, 2001;Bouchotroch et al, 2001;Franzmann & Tindall, 1990;Okamoto et al, 1993;Yoon et al, 2002).…”

unclassified

“…Halomonas was described as comprising Gramnegative, halotolerant, aerobic bacteria capable of growing over a wide range of salt concentrations. Moderately halophilic bacteria are abundant in saline habitats, and a number of Halomonas species have been isolated from different terrestrial and aquatic saline environments, mainly salterns, estuarine water, salt lakes, salty foods, sea ice and deep-sea hydrothermal vent environments, in the last few years (Baumann et al, 1983;Mellado et al, 1995;Romanenko et al, 2002;Vreeland et al, 1980;Yoon et al, 2002;Reddy et al, 2003;Kaye et al, 2004). Furthermore, this group of bacteria has great biotechnological potential for the production of compatible solutes or hydrolytic enzymes (Margesin & Schinner, 2001;García et al, 2004).…”

mentioning

confidence: 99%

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Halomonas koreensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea

Lim

Yoon

Lee

et al. 2004

International Journal of Systematic and Evolutionary Microbiology

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A moderately halophilic bacterium, strain SS20T, capable of growing at salinities of 1–20 % (w/v) NaCl was isolated from a solar saltern of the Dangjin area in Korea and was characterized taxonomically. Strain SS20T was a Gram-negative bacterium comprising motile, short rods. Its major cellular fatty acids were C18 : 1 ω7c, C19 : 0 ω8c cyclo and C16 : 0. The DNA G+C content was 70 mol% and the predominant ubiquinone was Q-9. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain SS20T belonged to the genus Halomonas. The levels of 16S rRNA gene sequence similarity to the type strains of Halomonas species were in the range 93·0–97·5 %. The levels of DNA–DNA relatedness between strain SS20T and the type strains of phylogenetically closely related Halomonas species were in the range 5·3–12·3 %. On the basis of physiological and molecular properties, strain SS20T represents a novel species of the genus Halomonas, for which the name Halomonas koreensis sp. nov. is proposed. The type strain is SS20T (=KCTC 12127T=JCM 12237T).

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supporting

confidence: 63%

“…70 67-68 60?7-64?2 6 3 6 2 ?2-64?1 60?5 6 6 ?7 6 5 ?7 (Arahal et al, 2001;Bouchotroch et al, 2001;Franzmann & Tindall, 1990;Okamoto et al, 1993;Yoon et al, 2002).…”

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confidence: 99%

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Halomonas koreensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea

Lim

Yoon

Lee

et al. 2004

International Journal of Systematic and Evolutionary Microbiology

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“…The major components (.10 % of total fatty acids) were C 19 : 0 cyclo v8c and C 16 : 0 (see Supplementary Table S1 in IJSEM Online). The profiles were similar to those of the type strains of previously described species belonging to the genera Modicisalibacter, Chromohalobacter, Halomonas and Cobetia, confirming the position of these strains in the family Halomonadaceae (Yoon et al, 2002;Peçonek et al, 2006). However, the relative amount of C 19 : 0 cyclo v8c was notably higher than that observed in most species of the family Halomonadaceae.…”

supporting

confidence: 65%

Aidingimonas halophila gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt lake

Wang

Tang

Lou

et al. 2009

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLO

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Two Gram-negative, facultatively anaerobic, catalase-positive, oxidase-negative, non-motile, rodshaped and moderately halophilic bacterial strains, designated YIM 90637 T and BH 017, were isolated from a salt lake in Xinjiang province, north-west China, and subjected to a polyphasic taxonomic study. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the two novel isolates were affiliated with the family Halomonadaceae; the two strains shared 100 % sequence similarity, but showed similarities of 94.7 % with the type strain of Modicisalibacter tunisiensis, 93.2-94.7 % with members of the genus Chromohalobacter, 93.2-95.0 % with members of the genus Halomonas and less than 92.0 % with other members of the family Halomonadaceae. However, DNA-DNA relatedness data and phenotypic properties demonstrated that strains YIM 90637 T and BH 017 were representatives of the same species. The major fatty acids were C 19 : 0 cyclo v8c and C 16 : 0. The relative amount of C 19 : 0 cyclo v8c was notably higher than that found in most species of the family Halomonadaceae for which fatty acid composition has been determined. The genomic DNA G+C content was 57.2-57.5 mol% and the only respiratory quinone was ubiquinone 9. Based on evidence from the polyphasic taxonomic study, it was concluded that the two strains should be classified as representatives of a novel species in a new genus, for which name Aidingimonas halophila gen. nov., sp. nov. is proposed; the type strain of Aidingimonas halophila is YIM 90637 T (5KCTC 12885 T 5CCTCC AB 207002 T ).The family Halomonadaceae was first proposed on the basis of results obtained with the 16S rRNA cataloguing technique (Franzmann et al., 1988). The family Halomonadaceae belongs to the class Gammaproteobacteria and, at the time of writing, included four genera of halophilic bacteria (Halomonas, Chromohalobacter, Modicisalibacter and Cobetia) and three genera of non-halophilic bacteria (Zymobacter, Halotalea and Carnimonas) (Okamoto et al., 1993;Dobson & Franzmann, 1996;Mata et al., 2002;Ventosa et al., 1998; Ben Ali Gam et al., 2007;Ntougias et al., 2007). Halomonas is the largest genus in the family Halomonadaceae and currently comprises more than 50 species. More than half of the taxa in the family Halomonadaceae have been reclassified because of their heterogeneous features (Franzmann et al., 1988;Mellado et al., 1995;Dobson & Franzmann, 1996; Arahal et al., 2002a, b) and the description of the family has been emended three times (Dobson & Franzmann, 1996;Ntougias et al., 2007; Ben Ali Gam et al., 2007). Nevertheless, the taxonomic status of some taxa, e.g. Cobetia marina, Halomonas marisflavi, Halomonas indalinina, Halomonas avicenniae and Halomonas salaria, is still 3These authors contributed equally to this work.The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains YIM 90637 T and BH 017 are FJ418176 and EU191906, respectively.The polar lipid composition of strain YIM 90637 T and the cellular fatty acid profiles of strains YIM 90637 T ...

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“…At the time of writing, the family Halomonadaceae belonging to the class Gammaproteobacteria consists of nine halophilic genera with validly published names (Aidingimonas, Chromohalobacter, Cobetia, Halomonas, Halotalea, Kushneria, Modicisalibacter, Salinicola and Larsenimonas) (Vreeland et al, 1980;Ventosa et al, 1989;Mellado et al, 1995;Arahal et al, 2002;Arahal & Ventosa, 2006;Gam et al, 2007;Ntougias et al, 2007;Sánchez-Porro et al, 2009;Wang et al, 2009;Leó n et al, 2015) that are capable of growth in saline environments with 15 % (w/v) salt concentrations plus two nonhalophilic genera (Carnimonas and Zymobacter) (Okamoto et al, 1993;Garriga et al, 1998). Among the genera, the genus Halomonas including Gram-stain-negative, moderately halophilic, aerobic or facultatively aerobic rod-shaped bacteria is the largest genus, which includes 90 species with validly published names that have been isolated from diverse saline environments such as solar salterns, salt lakes, fermented seafood, sea squirts, sea ice, hydrothermal vents and saline-alkali soil (Vreeland et al, 1980;Ventosa et al, 1998;Romanenko et al, 2002;Yoon et al, 2002;Kaye et al, 2004;Lim et al, 2004;Arenas et al, 2009;Kim et al, 2010;Guan et al, 2010;Guzmán et al, 2010;Jeong et al, 2013;Miao et al, 2014). Because members of the genus Halomonas are phenotypically diverse and have an unusually wide range of DNA G+C contents (52-74.3 mol%), they are being split into different genera (Arahal et al 2002).…”

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confidence: 99%

Halomonas garicola sp. nov., isolated from saeu-jeot, a Korean salted and fermented shrimp sauce

Jung

Lee

Jeon

2016

International Journal of Systematic and Evolutionary Microbiology

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Halomonas alimentaria sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.

Cited by 137 publications

References 24 publications

Halomonas koreensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea

Halomonas koreensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea

Aidingimonas halophila gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt lake

Halomonas garicola sp. nov., isolated from saeu-jeot, a Korean salted and fermented shrimp sauce

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