Blood Falls is the surface manifestation of brine released from below the Taylor Glacier, McMurdo Dry Valleys, Antarctica. Geochemical analyses of Blood Falls show that this brine is of a marine origin. The discovery that 74% of clones and isolates from Blood Falls share high 16S rRNA gene sequence homology with phylotypes from marine systems supports this contention. The bacterial 16S rRNA gene clone library was dominated by a phylotype that had 99% sequence identity with Thiomicrospira arctica (46% of the library), a psychrophilic marine autotrophic sulfur oxidizer. The remainder of the library contained phylotypes related to the classes Betaproteobacteria, Deltaproteobacteria, and Gammaproteobacteria and the division Bacteroidetes and included clones whose closest cultured relatives metabolize iron and sulfur compounds. These findings are consistent with the high iron and sulfate concentrations detected in Blood Falls, which are likely due to the interactions of the subglacial brine with the underlying iron-rich bedrock. Our results, together with previous reports, suggest that the brine below the Taylor Glacier hosts a viable ecosystem with microorganisms capable of growth, supported by chemical energy present in reduced iron and sulfur compounds. The metabolic and phylogenetic structure of this subglacial microbial assemblage appears to be controlled by glacier hydrology, bedrock lithology, and the preglacial ecosystem.Recent changes in our understanding of subglacial environments have led scientists to investigate the role of microorganisms in subglacial processes (65). Though these processes were once thought to be devoid of microbially mediated reactions (51), it is now clear that microorganisms contribute to subglacial weathering and carbon cycling (e.g., references 24, 47, 58, 60, 61, and 68). A growing consensus among these studies is that there is a strong link between geochemical signatures in subglacial materials and the metabolic processes present. The physical isolation, constant low temperatures, and permanent darkness of the subglacial environment make subglacial systems ideal sites for studying the relationship between microbial diversity and ecosystem function.Measurements of diversity in a particular habitat establish the community structure in which the functional or ecological niches of the system are filled (5). Emerging themes in the ecology of the subglacial ecosystem are that glacier hydrology and bedrock lithology control microbial community structure (60, 65). The niche space generated by these controlling factors would clearly affect metabolic community structure by influencing electron acceptor and donor availability in the subglacial setting.