Mouse liver cDNA clones related to the C4 and C4-Slp isoforms of the fourth component of complement differ by few nucleotide changes within a region of substantial divergence from human C4. It is suggested that the mouse C4 gene duplication is an evolutionarily recent event with respect to the time of mammalian radiation. This conclusion is reinforced by the presence of a single C4 gene in the Syrian hamster. Most H-2 haplotypes, including those characterized by an undetectable C4-Slp protein, possess two C4 gene copies which, in contrast to the neighboring factor B, show a marked restriction site polymorphism. The genetic variation of this region is emphasized by the presence in the mouse of a rare "polymorphism" for C4 gene number. Multiple C4-related gene copies characterize those exceptional wild-derived H-2 haplotypes, H-2w7, H-2wl6, and H-2wl9, that determine the expression of the C4-Slp protein in female animals.The S region of the mouse H-2 gene complex was defined by two nonallelic genes encoding the isotypic forms C4 and C4-Slp (sex-limited protein) § of the fourth component of the complement system (1-3).Prior to the discovery of their biological function and the recognition that discrete genes encode the C4 and C4-Slp forms, the two proteins were collectively referred to as the mouse Ss (serum substance) protein, detected by means of xenoantisera (see ref. 4 for a recent review). C4-Slp, the form that is identified by an allotypic antiserum, does not possess all the functional properties of C4 and in fact is hemolytically inactive. The two proteins display considerable structural and quantitative genetic variation (5) and are also distinguished by the regulation and site of expression of their genes. C4-Slp is normally produced only in hepatocytes and its expression is controlled by at least two genetically dissectable mechanisms. By definition, this protein displays sexual dimorphism in that it is androgen controlled and normally undetectable (although testosterone inducible) in females of the standard C4-Slp-positive strains. However, some exceptional wild-derived H-2 haplotypes-namely, H_2w7, H-2w16, and H-2w`9-determine the expression of C4-Slp in both male and female mice (6, 7). In these mice, the protein is produced not only by the liver but also by resident peritoneal macrophages, a cell type that in all strains is the second normal site of C4 expression. This allelism for an androgen-controlled or androgen-independent C4-Slp expression was shown by segregation analysis to involve cis-acting regulatory elements genetically inseparable from the structural gene (8). Alternatively, C4-Slp can be expressed in female mice of certain strains by a second type of androgen-and androgen receptor-independent mechanism, which, however, is not linked to the H-2 complex. This latter phenotype appears to be controlled by transacting and as yet unmapped regulator genes (rsl) able to mimic testosterone action (9). On the other hand, the genetic bases of the lack of C4-Slp even in the males of strains...