Background & Aims: Improving patient selection and development of biological therapies such as vedolizumab in inflammatory bowel disease (IBD) requires a thorough understanding of the mechanism of action and target binding, thereby providing individualized treatment strategies. We aimed to visualize the macroscopic and microscopic distribution of intravenous injected fluorescently labeled vedolizumab, vedo-800CW, and identify its target cells using fluorescence molecular imaging (FMI). Methods: Forty-three FMI procedures were performed, which consisted of macroscopic in vivo assessment during endoscopy, followed by macroscopic and microscopic ex vivo imaging. In phase A, patients received 4.5 mg, 15 mg vedo-800CW or no tracer prior to endoscopy. In phase B, patients received 15 mg vedo-800CW preceded by an unlabelled (sub)therapeutic dose of vedolizumab. Results: FMI quantification showed a dose-dependent increase in vedo-800CW fluorescence intensity in inflamed tissues, with 15 mg (153.7 a.u. [132.3-163.7]) as most suitable tracer dose compared to 4.5 mg (55.3 a.u. [33.6-78.2]) in naive patients (p=0.0002). Moreover, the fluorescence signal decreased by 61% when vedo-800CW was administered after a therapeutic dose of unlabeled vedolizumab, suggesting target saturation in the inflamed tissue. Fluorescence microscopy and immunostaining showed that vedolizumab penetrated the inflamed mucosa and was associated with several immune cell types, most prominently with plasma cells. Conclusion: These results indicate the potential of FMI to determine the local distribution of drugs in the inflamed target tissue and identify drug target cells, providing new insights into targeted agents for their use in IBD. Regarding vedolizumab, we provide valuable information about its main target cells, contributing to our understanding of the underlying mechanism of action (ClincialTrials.gov,NCT04112212).