Enterococcus faecalis (E. faecalis) is frequently encountered in asymptomatic, persistent endodontic infections; thus, its control and eradication via disinfectants are important. To explore a disinfectant formulation that is effective yet with minimal side effects, here, we evaluated the susceptibility of E. faecalis to three intracanal disinfectants. We quantitatively assessed and compared the growth-or metabolism-inhibiting effects of intracanal disinfectants via minimum inhibitory concentration (MIC) and minimum inhibitory concentration based on metabolic activity (MIC-MA), based on the broth dilution test and D 2 O-probed single-cell Raman spectra (SCRS), respectively. For sodium hypochlorite (NaClO), hydrogen peroxide (H 2 O 2 ), and chlorhexidine gluconate (CHX), the corresponding MIC was 0.45 g/L, 110 mg/L, and 6 mg/L, respectively. Under their respective MIC doses, metabolic activity of bacterial cells was reduced to 2%, 4%, and 2% remained at 8 h, yet recovered to a retention level of 90%, 97%, and 2% at 24 h. Despite the halting of growth, the remained metabolic activity suggests a "nongrowing but metabolically active" (NGMA) state that may lead to potential recurring infections. In contrast, at their respective MIC-MA doses of 0.9 g/L, 220 mg/L, and 12 mg/L, metabolic activities of all cells were completely inhibited throughout 24-h exposure. Furthermore, lower combined concentration of above three intracanal disinfectants Yuhan Liu, Yuying Ma, and Lijuan Zhang contributed equally to this work.