In the present paper the synthesis of magnetite nanoparticles and their surface functionalization with protein has been described. Surface functionalization of these nanoparticles was confirmed using various techniques including Transmission Electron Microscopy, X-Ray Diffraction, Vibrating Scanning Magnetometry, Thermo-gravimetric studies and Fourier Transform Infrared Spectroscopy. Further, surface-functionalized magnetite nanoparticles were loaded with ciprofloxacin drug and then screened for their antibacterial activity against two gram-positive (Bacillus subtilis and Staphylococcus aureus) and two gram-negative (Pseudomonas aeruginosa and Escherichia coli) bacterial strains.