We tested the singular and interactive effects of resource availability (light) and community composition (food chain length and herbivore species richness) on eelgrass (Zostera marina) ecosystem properties and functioning with an experimental mesocosm system. Food chain length was manipulated through the presence or absence of blue crab (Callinectes sapidus) predators, whereas grazer species richness varied across three levels (zero, two, or four crustacean species). We found important and interacting effects of bottom-up and top-down forcings on sediment organic matter (SOM) composition. Light increased eelgrass and algal biomass and sediment organic carbon and nitrogen content. Increasing grazer diversity generally decreased algal biomass and ecosystem production but interacted with food chain length (i.e., presence of predatory crabs) and light. Predators generally increased algal biomass and ecosystem production through a trophic cascade, which was stronger at high grazer diversity and under ambient light. SOM composition, determined with fatty acid (FA) biomarkers, was sensitive to all manipulated variables. Increasing grazer species richness often decreased the contributions of FAs derived from plant and algal sources, whereas increasing light had the opposite effect. Food chain length was generally a less important determinant of SOM composition than light, although predators did increase FAs representative of heterotrophic bacteria. Overall, resource availability and epibenthic community composition strongly influenced organic matter cycling, SOM composition, and the bacterial community in seagrass-bed sediments.Coastal ecosystems are often affected by multiple disturbances that alter both resource availability and community composition simultaneously. In the Chesapeake Bay, for example, seagrass beds are affected by commercial harvesting of the blue crab, Callinectes sapidus (Stephan et al. 2000), and by suspended sediment and nutrient loading that can lead to reduced light availability (Kemp et al. 2004). Changes in abundance of important predators, such as the striped bass or the blue crab, may precipitate changes in the biomass of lower trophic levels (Hairston et al. 1960;Strong 1992;Pace et al. 1999). These shifting trophic interactions, along with reduced light availability, can affect primary producer abundance and productivity (Heck et al. 2000;Hughes et al. 2004;Borer et al. 2006) and, in turn, sediment organic matter (SOM) content (Canuel et al. 2007). Consequently, cascading changes in animal and plant biomass may alter the rates and pathways by which organic matter (OM) is cycled in an ecosystem (Schindler et al. 1997;Dangles and Malmqvist 2004).Predicting how changing trophic structure affects OM cycling is complicated by the fact that predators induce shifts not only in prey biomass but also in prey community structure. In seagrass systems, for example, grazing invertebrates can consume epiphytic algae, macroalgae, benthic microalgae, and vascular plants (Valentine and Duffy 2006)...