The use of bone marrow-derived mesenchymal stem cells (MSCs) for clinical and experimental studies is increasing, but full characterization of MSCs in veterinary species is hindered by the variability in species-specific cell surface marker expression and antibody cross reactivity. Recent studies demonstrated that the glycans in the glycocalyx of MSCs are promising candidates as cell biomarkers. In the present study, we analyzed the glycocalyx of canine MSCs (cMSCs), ovine MSCs (oMSCs), and equine MSCs (eMSCs) using a cell microarray procedure in which MSCs were spotted on microarray slides and incubated with a panel of 14 biotinylated lectins and Cy3-conjugated streptavidin. The signal intensity was then detected using a microarray scanner. The lectinbinding signals indicated that the MSC surface of the investigated species contained both N-and O-linked glycan types, with N-glycosylation predominating over O-glycosylation and fucosylation being more abundant than sialylation. Relative quantification revealed an interspecific difference between these glycans. In addition, cMSCs expressed more a2,3-linked sialic acid (MAL II), terminal lactosamine (RCA 120 ), and a1,6 and a1,3 fucosylated oligosaccharides (PSA, LTA); oMSCs exhibited more T antigen (Jacalin), GalNAca1,3(LFuca1,2)Galb1,3/4GlcNAcb1 (DBA), chitotriose (succinylated WGA), and a1,2-linked fucose (UEA I); and eMSCs showed a higher density of a2,6 sialic acids (SNA) and high mannose N-glycans (Con A). Using cell microarray methodology, we have for the first time demonstrated differences in the glycosylation profiles of cMSC, oMSC, and eMSC surfaces. These results could be valuable as resources and references for MSC differentiation and molecular remodeling in clinical cell-based therapy and tissue engineering studies. V C 2017 International Society for Advancement of Cytometry Key terms mesenchymal stromal cells; dog; horse; sheep; glycoconjugates; glycomics; cell microarray BONE marrow (BM)-derived mesenchymal stem cells (MSCs) are nonhematopoietic adult multipotent cells characterized by their plastic adherence, capacity to differentiate into a variety of tissues (including fat, bone, and cartilage) and to migrate to diseased organs (1,2), strong immunosuppressive properties, and secretion of regenerative factors (3). Therefore, MSCs are promising for application in cell-based therapy.Human MSCs (hMSCs) express several surface markers, the most prominent of which, CD73, CD90, CD105, CD166, and Stro-1, are not specific (4). Therefore, a deeper knowledge of surface markers for precise labeling and tracking of MSCs is of paramount importance, especially in regenerative medicine.The MSC surface is coated with a glycocalyx, a dense layer composed of many different complex carbohydrates, which represents the interface between the cell and Original Article the extracellular environment. MSC carbohydrate epitopes are involved in several aspects of stem cell biology, such as communication with the stem cell environment and interaction with its niche, mo...