Background: Urinary sediment is a non-invasive laboratory test that can be performed by an automated analyzer, or manually by trained personnel. Manual examination remains the diagnostic standard because it excels at differentiating isomorphic from dysmorphic red blood cells, and identifying other urinary particles such as renal tubular epithelial cells (RTECs), lipids, crystals, and the composition of casts. This study aimed to investigate the prevalence of a complete profile of urinary sediment particles and its associations with histological lesions on kidney biopsy, regardless of diagnosis. Methods: Single center, observational retrospective study of 131 patients who had contemporary manual urinary sediment evaluation and kidney biopsy. A comprehensive set of urinary particles and histological lesions were quantified, and their associations were analyzed. Results: In our samples, we found an elevated frequency of findings suggestive of proliferative kidney disease, and a low frequency of particles evoking urological damage. The association of histological lesions and urinary particles was explored with a multivariate model. We identified urinary sediment characteristics that independently correlated with the presence of some histological lesions: urinary lipids with mesangial expansion [OR 2.86 (1.30-6.30)], mesangial hypercellularity [OR 2.44 (1.06-5.58)], and wire loops and/or hyaline deposits [OR 2.89 (1.13-7.73)], and urinary renal tubular epithelial cells with endocapillary hypercellularity [OR 3.17 (1.36-7.39)], neutrophils and/or karyorrhexis [OR 4.51 (1.61-12.61)], fibrinoid necrosis [OR 4.35 (1.48-12.74)], cellular/fibrocellular crescents [OR 5.27 (1.95-14.26)] and acute tubular necrosis [OR 2.31 (1.08-4.97)]. Conclusion: In a population of patients submitted to kidney biopsy, we found that the presence of some urinary particles (renal tubular epithelial cells, lipids, and dysmorphic erythrocytes), which are seldom reported by automated analyzers, is associated with active proliferative histological lesions. In this regard, manual urinary sediment evaluation may help to shape the indications for performing a kidney biopsy.