2014
DOI: 10.1371/journal.pone.0092139
|View full text |Cite
|
Sign up to set email alerts
|

Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)

Abstract: We investigated the global patterns of abundance, diversity, and community structure of members of the Aminicenantes (candidate phylum OP8). Our aim was to identify the putative ecological role(s) played by members of this poorly characterized bacterial lineages in various ecosystems. Analysis of near full-length 16S rRNA genes identified four classes and eight orders within the Aminicenantes. Within 3,134 datasets comprising ∼1.8 billion high throughput-generated partial 16S rRNA genes, 47,351 Aminicenantes-a… Show more

Help me understand this report

Search citation statements

Order By: Relevance

Paper Sections

Select...
2
1
1
1

Citation Types

4
53
0
1

Year Published

2014
2014
2021
2021

Publication Types

Select...
9
1

Relationship

0
10

Authors

Journals

citations
Cited by 88 publications
(58 citation statements)
references
References 63 publications
4
53
0
1
Order By: Relevance
“…Identification of CP-'Diapherotrites' in metagenomic data sets was conducted using the three 'Diapherotrites' SAG assemblies for anchoring metagenomic reads as previously described (Rinke et al, 2013). To identify the distribution using data in Sanger-and high-throughput-generated data sets, we followed the protocols previously described in Farag et al (2014).…”
Section: Principal Component Analysis (Pca)mentioning
confidence: 99%
“…Identification of CP-'Diapherotrites' in metagenomic data sets was conducted using the three 'Diapherotrites' SAG assemblies for anchoring metagenomic reads as previously described (Rinke et al, 2013). To identify the distribution using data in Sanger-and high-throughput-generated data sets, we followed the protocols previously described in Farag et al (2014).…”
Section: Principal Component Analysis (Pca)mentioning
confidence: 99%
“…It has been estimated that there may be ⩾ 100 candidate phyla in the domain Bacteria (Baker and Dick, 2013;Kantor et al, 2013;Yarza et al, 2014), significantly outnumbering phyla with cultivated representatives. Although candidate phyla are typically of low abundance, that is, part of the 'rare biosphere' (Sogin et al, 2006;Elshahed et al, 2008), they are prominent members of microbial communities in several different environments (Harris et al, 2004;Chouari et al, 2005;Vick et al, 2010;Peura et al, 2012;Cole et al, 2013;Farag et al, 2014;Gies et al, 2014;Parkes et al, 2014) and may have important ecological roles (Sekiguchi, 2006;Yamada et al, 2011). SAG sequencing and metagenomics have yielded partial, nearly-complete or complete genomes for close to 20 candidate bacterial phyla (Glöckner et al, 2010;Siegl et al, 2011;Youssef et al, 2011;Takami et al, 2012;Wrighton et al, 2012;Dodsworth et al, 2013;Kantor et al, 2013;McLean et al, 2013;Rinke et al, 2013;Kamke et al, 2014;Wrighton et al, 2014), as well as several major uncultivated lineages of Archaea (Elkins et al, 2008;Baker et al, 2010;Ghai et al, 2011;Nunoura et al, 2011;Narasingarao et al, 2012;Kozubal et al, 2013;Rinke et al, 2013;Youssef et al, 2015), opening a genomic window to a much better understanding of this so-called 'microbial dark matter' …”
Section: Introductionmentioning
confidence: 99%
“…Many of these were subsequently shown to also inhabit non-thermal environments and have come into focus in a variety of habitats (e.g. [6][7][8]). Over the last ten years, a few thermophilic members of these groups and others have been isolated and described as axenic cultures (e.g.…”
Section: Introductionmentioning
confidence: 99%