Varicella-zoster virus (VZV) is genetically stable; and various schemes for the genotyping of VZV based on restriction fragment length polymorphisms (RFLPs), PCR, and sequencing have been developed. At least three major genotypes have been recognized among VZV isolates or clinical samples from different locations around the world; however, few data were available for viral isolates from China. In the current study, a collection of 19 VZV isolates from patients with zoster or varicella in the middle eastern region of China was examined for genetic variations. RFLP analysis of DNA fragments of open reading frames (ORFs) 38, 54, and 62 showed that all 19 isolates were PstI and BglI positive and SmaI negative, and this may represent the major restriction pattern of wild-type VZV strains in China. Further analysis of the R5 variable-repeat region in those strains revealed that 9 (47.4%) were type R5A, while the remaining 10 strains (52.6%) were type R5B. On the basis of the sequencing data for ORFs 1, 21, 22, and 54, all 19 Chinese strains could be grouped into genotype J or J1. A novel in-frame 3-nucleotide insertion (CGG) in ORF1 was found in 4 (21%) of the 19 isolates. Additionally three new nucleotide substitutions were detected in two of the isolates. A varicella isolate from the United States, strain MLS, was included in this study as a control for American wild-type VZV, and was found to be type M1, which represents one of the minor genotypes in North America.
Varicella-zoster virus (VZV) is a member of the subfamilyAlphaherpesvirinae within the family of Herpesviridae. Primary infection with VZV causes chickenpox (varicella), which usually occurs during childhood. During primary infection, a latent infection is established in the sensory ganglia, such as those of the dorsal roots and trigeminal nerves. The reactivation of VZV results in herpes zoster (shingles). The age at the time of VZV infection is often related to disease severity, with the greatest risk occurring among very young and very old individuals; immunocompromised persons are also at elevated risk for severe disease (4).The VZV genome is highly conserved and consists of about 125 kb of linear, double-stranded DNA with about 70 open reading frames (ORFs). The interstrain genomic variation in the VZV genome is limited to about 0.1% and consists almost entirely of single-nucleotide changes dispersed evenly across the genome. On the basis of the analysis of single nucleotide polymorphisms (SNPs), at least three or four geographically distinct genotypes have been described (1,13,23).Several VZV genotyping schemes have been developed, and each proposes a different classification for genotyping. By analysis of selected SNPs in ORFs 1, 21, 50, and 54, four genotypes have been identified: A (Africa/Asia), B and C (Europe, North America), and J (Japanese). Genotype B may represent a recombinant between genotypes A and C (1). Loparev et al. reported that by the analysis of a short region (447 bp) in ORF22, three major genotypes can be distinguished: E (Eur...