2019
DOI: 10.3389/fgene.2019.00692
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Genome-Wide Identification of Microsatellites and Transposable Elements in the Dromedary Camel Genome Using Whole-Genome Sequencing Data

Abstract: Transposable elements (TEs) along with simple sequence repeats (SSRs) are prevalent in eukaryotic genome, especially in mammals. Repetitive sequences form approximately one-third of the camelid genomes, so study on this part of genome can be helpful in providing deeper information from the genome and its evolutionary path. Here, in order to improve our understanding regarding the camel genome architecture, the whole genome of the two dromedaries (Yazdi and Trodi camels) was sequenced. Totally, 92- and 84.3-Gb … Show more

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Cited by 7 publications
(4 citation statements)
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References 46 publications
(72 reference statements)
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“…In all the breeds, abundance of mononucleotides was observed which might be because of the inherent limitation of the chemistry employed in next-generation sequencing for data generation ( Haseneyer et al, 2011 ) ( Figure 3B ). A similar higher proportion of mono repeats has been found in other animals like cattle, horse, and camel ( Ma, 2016 ; Khalkhali-Evrigh et al, 2019 ). The relative distributions of various SSR motif lengths in genomes differ from species to species ( Sharma et al, 2007 ).…”
Section: Resultssupporting
confidence: 78%
“…In all the breeds, abundance of mononucleotides was observed which might be because of the inherent limitation of the chemistry employed in next-generation sequencing for data generation ( Haseneyer et al, 2011 ) ( Figure 3B ). A similar higher proportion of mono repeats has been found in other animals like cattle, horse, and camel ( Ma, 2016 ; Khalkhali-Evrigh et al, 2019 ). The relative distributions of various SSR motif lengths in genomes differ from species to species ( Sharma et al, 2007 ).…”
Section: Resultssupporting
confidence: 78%
“…Identification of genetic variation in the whole-genome scale gives us the opportunity of development of approaches like genome-wide association studies and genomic selection [ 15 ]. As an achievement, these tools can help in selecting a base population and increasing the number of Iranian Bactrian camels, as well as deepening our knowledge to designing appropriate breeding strategies for this valuable livestock [ 42 ].…”
Section: Discussionmentioning
confidence: 99%
“…In addition to the four species above, research on TE in other livestock and poultry species—including goat [ 84 ], sheep [ 38 ], rabbit [ 85 ], buffalo [ 86 ], and camel [ 87 , 88 ]—mainly involves the composition and evolution of TE. There may be fewer functional genome and epigenetic annotations available for these species compared to the previously mentioned ones.…”
Section: Introductionmentioning
confidence: 99%