Genome-wide identification and characterization of the Dof gene family in moso bamboo (Phyllostachys heterocycla var. pubescens)

Genome-Wide Identification and Characterization of the <i>Dof</i> Transcription Factor Gene Family in <i>Phaseolus vulgaris</i> L.

“…This gene family is especially prominent in such plants as Arabidopsis spp. and O. sativa [5], G. max [40], S. lycopersicum [9], S. officinarum [43], and P. heterocycla [12]. In this study, we identified a total of 36PvDof genes in P. vulgaris (Table 1).…”

“…Identification of each of these motifs is also illustrated in Figure 2, in which motif 1 is represented by the Dof domain that is uniformly found in all bean protein sequences ( Table 3). The motifs 12,16,19,20,23,24, and 25 were observed in subclass A; motifs 2, 3, 5, 6, 7, 8, 12, 14, 15, 22, 23, and 24, were observed in subclass B1, which contained the highest number of motifs; motifs 7, 12, 16, 19, 20, 23, and 24 were observed in subclass B2; motifs 4,10,15,17,18,21, and 23 were observed in subclass C1; motifs 4, 9, 10, 11, 13, 18, 19, and 25 were observed in subclass C2; and the subclasses D1 and D2 contained two motifs each, consisting of 5 and 21 and 8 and 9, respectively. From these results, it can be seen that the majority of the members …”

“…Transcription factors (TFs) are responsible for regulating the expression of genes involved in plant-specific cis-regulatory elements in the promoter regions [3]. Yanagisawa and Schmidt [4] were the first to isolate the TF in maize, with an array of Dof TF genes subsequently isolated and functionally characterized in many plants, including Arabidopsis thaliana and Orizasativa [5] [6], Sorghum bicolor (L.) Moench [7], Brachypodium distachyon [8], Solanum lycopersicum [9], Ricinus communis L. [10], Cajanus cajan [11], Phyllostachys heterocycla [12], Chrysanthemum morifolium [13], Capsicum annuum [14] and Populus trichocarpa [15].…”

Genome-wide characterization and expression analysis of the Dof gene family related to abiotic stress in watermelon

“…Besides fruits,ClDof11,ClDof21,ClDof27,ClDof29,ClDof35, and ClDof36 also showed high expression in flowers, which was also observed in other plants. For example, all PheDof genes displayed differential expression patterns during the flower development stage of moso bamboo (Cheng et al, 2018;Wang et al, 2016), and overexpression of PheDof12-1 in Arabidopsis resulted in early flowering under long-day conditions (Liu et al, 2019a). In rubber tree, the HbDof genes in Cluster III and Cluster VI are typically expressed in male and female flowers, respectively (Zou & Yang, 2019).…”

Characterization of IQ Domain Gene Homologs as Common Candidate Genes for Elongated Fruit Shape in Cucurbits

“…The IQD mediates calmodulin (CaM) retention in a Ca 2+ -independent manner (Bähler and Rhoads, 2002;Hoeflich and Ikura, 2002) and regulates the growth and metabolism of plants (Feng et al, 2014;Abel et al, 2005). The IQD gene family has been analyzed across the plant kingdom, including Arabidopsis thaliana (Bürstenbinder et al, 2013), Glycine max (Feng et al, 2014), Oryza sativa (Abel et al, 2005), Populous trichocarpa (Ma et al, 2014), and Moso bamboo (Wang et al, 2016).…”