Genome-Wide Functional Annotation Environment for Thermus thermophilus in OBIGrid

Fukuzaki, Akinobu; Nagashima, Takeshi; Ide, Kaori; Konishi, Fumikazu; Hatakeyama, Mariko; Yokoyama, Shigeyuki; Kuramitsu, Seiki; Konagaya, Akihiko

doi:10.1007/978-3-540-32251-1_8

Cited by 5 publications

(3 citation statements)

References 12 publications

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“…Synergy effects can be expected if participants bring together their own knowledge. Grid portals [49][50][51][52][53][54] and application-oriented grids [52][53][54] play an essential role in this process.…”

Section: Combinationmentioning

confidence: 99%

Retraction: Changing from computing grid to knowledge grid in life‐science grid

Talukdar¹,

Konar²,

Datta³

et al. 2011

Biotechnology Journal

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Section: Combinationmentioning

confidence: 99%

Retraction: Changing from computing grid to knowledge grid in life‐science grid

Talukdar¹,

Konar²,

Datta³

et al. 2011

Biotechnology Journal

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“…Synergy effects can be expected if participants bring together their own knowledge. Grid portals [55-57] and application-oriented grids [58-61] play an essential role in this process.…”

Section: Knowledge Gridmentioning

confidence: 99%

Trends in life science grid: from computing grid to knowledge grid

Konagaya

2006

BMC Bioinformatics

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“…As of July 2005, more than 400 portal users had registered for the bioinformatics applications on the Open Bioinformatics Grid (OBIGrid i ). One successful example is the genome annotation support system (OBITco) developed for the Thermus thermophilus research community in Japan [18].…”

Section: Superstructure For Biomedical Knowledge Creationmentioning

confidence: 99%

THE GRID AS A “Ba” FOR BIOMEDICAL KNOWLEDGE CREATION

Konagaya¹

2006

Grid Computing in Life Sciences

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Data-driven biology, typified by the Human Genome Project, has produced an enormous amount of experimental data, including data on genomes, transcriptomes, proteomes, interactomes, and phenomes. The next pursuit in genome science concentrates on elucidating relations among the data. Key to understanding these relations are bio-networks that incorporate information on protein-protein interactions, metabolic pathways, signal transduction pathways, and gene regulatory networks. Development of these bio-networks, however, requires biomedical knowledge of life phenomena in order to add biological interpretations. In this sense, data creation and knowledge creation play complementary roles in the development of genome science. As for knowledge creation, Ikujiro Nonaka proposed the importance of "ba", that is, a time and place in which people share knowledge and work together as a community. Grid computing offers great potential to extend the concept of "ba" to networks, especially in terms of deepening the understanding and use of bio-networks by means of sharing explicit knowledge represented by ontology, mathematical simulation models and bioinformatics workflows.

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Genome-Wide Functional Annotation Environment for Thermus thermophilus in OBIGrid

Cited by 5 publications

References 12 publications

Retraction: Changing from computing grid to knowledge grid in life‐science grid

Retraction: Changing from computing grid to knowledge grid in life‐science grid

Trends in life science grid: from computing grid to knowledge grid

THE GRID AS A “Ba” FOR BIOMEDICAL KNOWLEDGE CREATION

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