Genome Sequences of Mycobacteriophages AlanGrant, Baee, Corofin, OrangeOswald, and Vincenzo, New Members of Cluster B

Pope, Welkin H.; Carbonara, Maria E.; Cioffi, Hanna M.; Cruz, Tamara; Dang, Brian Q.; Doyle, Alexander N.; Fan, Olivia H.; Gallagher, Molly; Gentile, Gabrielle M.; German, Brian A.; Farrell, Margaret E.; Gerwig, Madeline; Hunter, K.; Lefever, Virginia E.; Marfisi, Nicole A.; McDonnell, Jill E.; Monga, Jappmann K.; Quiroz, Kevin G.; Pong, Alexandra C.; Rimple, Patrick A.; Situ, Michelle; Sohnen, Peri; Stockinger, Annmarie N.; Thompson, Paige K.; Torchio, Nicole M.; Toner, Chelsea L.; Ulbrich, Megan C.; Vohra, Neelam I.; Zakir, Aala; Adkins, Nancy L.; Brown, Bryony R.; Churilla, Bryce M.; Kramer, Zachary J.; Lapin, Jonathan S.; Montgomery, Matthew T.; Prout, Ashley K.; Grubb, Sarah R.; Warner, Marcie H.; Bowman, Charles A.; Russell, Daniel A.; Hatfull, Graham F.

doi:10.1128/genomea.00586-15

Cited by 4 publications

(4 citation statements)

References 9 publications

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“…As a qualitative measurement, the progression of several projects toward publication can be taken as a measure of the success of the approach described herein at least pertaining to productivity. Other CUREs have similarly resulted in peer-reviewed publications. – As of this writing, one project from Project Time! has reached the milestone of publication in preparation.…”

Section: Assessmentmentioning

confidence: 98%

Project Time! A Course-Based Undergraduate Research Experience, a CURE for the Traditional Organic Lab

D’Angelo

2023

J. Chem. Educ.

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In recent years, course-based undergraduate research experiences (CUREs) have been increasing in popularity as replacements for or adjuvants to the traditional laboratory experience. This approach shifts the focus from an exercise-based curriculum to an experiment-based curriculum and provides students with a more authentic and higher-impact scientific experience. Reported herein are the details of a CURE deployed in the organic chemistry II lab at a primarily undergraduate institution. In this instance, students are given nearly free rein regarding their group projects completed during the second semester. Quantitative assessment of the approach through student surveys is provided, though the statistical significance of the results is at best questionable. Qualitatively, one project has resulted in a paper in preparation and others are nearing this milestone, demonstrating the viability of the approach to expose students to doing publishable scientific research and the scientific process. Additionally, free responses to survey questions seem to suggest that the method is a success.

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Section: Assessmentmentioning

confidence: 98%

Project Time! A Course-Based Undergraduate Research Experience, a CURE for the Traditional Organic Lab

D’Angelo

2023

J. Chem. Educ.

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“…The genome was run through Web-based tRNAscan-SE ( 9 ), and no tRNA genes were predicted. The genome had 99% nucleotide match to cluster B and subcluster B3 mycobacteriophages from the Actinobacteriophage Database, with similar sequence identity to Phaedrus, OrangeOswald, and Phyler ( 10 ), placing it in the class Caudoviricetes and genus Pegunavirus .…”

Section: Announcementmentioning

confidence: 99%

Genome Sequence of Mycobacteriophage Bassalto

Barekzi

Wilkins

Williams

et al. 2023

Microbiol Resour Announc

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“…A nucleotide BLAST search demonstrated that Donny is closely conserved with subcluster B5 phages Acadian (99.99% identity) and Baee (93% identity) ( 14 – 16 ). Genes 1 to 20 are closely conserved with Baee in function and length.…”

Section: Announcementmentioning

confidence: 99%