Genome Sequence of the Sulfate-Reducing Bacterium Pseudodesulfovibrio portus JCM 14722
            <sup>T</sup>

Kataoka, Takafumi; Kondo, Ryou

doi:10.1128/mra.00947-22

Cited by 1 publication

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“… *Information deduced from the genome analysis. †Determined in presence of acetate or yeast extract as carbon source. ‡Determined in the absence of a carbon source. §Data from [23]. ¶Data from [22].…”

Section: Physiology and Chemotaxonomymentioning

confidence: 99%

“…Prior to calculating the genome-to-genome distance, the genome sequence of P. portus MSL79 T was determined in the same manner as that of SYK T and deposited in DDBJ under the accession number AP026708 [23]. Digital DNA–DNA hybridisation (dDDH) values were calculated using formula two in the Genome-to-Genome Distance Calculator (GGDC) tool (http://ggdc.dsmz.de/distcalc2.php) [24].…”

Section: Genome Featuresmentioning

confidence: 99%

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Pseudodesulfovibrio nedwellii sp. nov., a mesophilic sulphate-reducing bacterium isolated from a xenic culture of an anaerobic heterolobosean protist

Kondo

2023

International Journal of Systematic and Evolutionary Microbiology

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A novel sulphate-reducing bacterium, strain SYKT, was isolated from a xenic culture of an anaerobic protist obtained from a sulphidogenic sediment of the saline Lake Hiruga in Fukui, Japan. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that SYKT clustered with the members of the genus Pseudodesulfovibrio . The closest relative of strain SYKT was Pseudodesulfovibrio sediminis SF6T, with 16S rRNA gene sequence identity of 97.43 %. Digital DNA–DNA hybridisation and average nucleotide identity values between SYKT and species of the genus Pseudodesulfovibrio fell below the respective thresholds for species delineation, indicating that SYKT represents a novel species of the genus Pseudodesulfovibrio . Cells measured 1.7–3.7×0.2–0.5 µm in size and were Gram-stain-negative, obligately anaerobic, motile by means of a single polar flagellum and had a curved rod or sigmoid shape. Cell growth was observed under saline conditions from pH 6.0 to 9.5 (optimum pH 8.0–9.0) and at a temperature of 10–30 °C (optimum 25 °C). SYKT used lactate, pyruvate, fumarate, formate and H2 as electron donors. It used sulphate, sulphite, thiosulphate and sulphur as terminal electron acceptors. Pyruvate and fumarate were fermented. Major cellular fatty acids were anteiso-C15 : 0, C16 : 0, anteiso-C17 : 1ω9c, summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) and summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c). The DNA G+C content of SYKT was 49.4 mol%. On the basis of the the genetic and phenotypic features, SYKT was determined to represent a novel species of the genus Pseudodesulfovibrio for which the name Pseudodesulfovibrio nedwellii sp. nov. is proposed with type strain SYKT (=DSM 114958T=JCM 35746T).

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Section: Physiology and Chemotaxonomymentioning

confidence: 99%

Section: Genome Featuresmentioning

confidence: 99%

Pseudodesulfovibrio nedwellii sp. nov., a mesophilic sulphate-reducing bacterium isolated from a xenic culture of an anaerobic heterolobosean protist

Kondo

2023

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

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Genome Sequence of the Sulfate-Reducing Bacterium Pseudodesulfovibrio portus JCM 14722 ^T

Cited by 1 publication

References 8 publications

Pseudodesulfovibrio nedwellii sp. nov., a mesophilic sulphate-reducing bacterium isolated from a xenic culture of an anaerobic heterolobosean protist

Pseudodesulfovibrio nedwellii sp. nov., a mesophilic sulphate-reducing bacterium isolated from a xenic culture of an anaerobic heterolobosean protist

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Genome Sequence of the Sulfate-Reducing Bacterium Pseudodesulfovibrio portus JCM 14722 T

Cited by 1 publication

References 8 publications

Pseudodesulfovibrio nedwellii sp. nov., a mesophilic sulphate-reducing bacterium isolated from a xenic culture of an anaerobic heterolobosean protist

Pseudodesulfovibrio nedwellii sp. nov., a mesophilic sulphate-reducing bacterium isolated from a xenic culture of an anaerobic heterolobosean protist

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Genome Sequence of the Sulfate-Reducing Bacterium Pseudodesulfovibrio portus JCM 14722 ^T