Genome and Transcriptome Sequencing Analysis of Fusarium
            <i>commune</i>
            Provides Insights into the Pathogenic Mechanisms of the Lotus Rhizome Rot

Kuang, Weigang; Zhang, Lianhu; Ye, Lifang; Ma, Jian; Shi, Xugen; Lin, Yachun; Sun, Xiaotang; Cui, Ruqiang

doi:10.1128/spectrum.00175-22

Cited by 5 publications

(2 citation statements)

References 65 publications

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“…4A ; Table S1). This is quite rich compared with other plant-pathogenic fungi ( 27 ). A. pisi HNA23 harbored 555 CAZymes, which is a relatively large number in comparison to those in other Ascochyta spp., excluding A. lentis and A. viciae-villosae ( Fig.…”

Section: Resultsmentioning

confidence: 99%

Genome and Transcriptome Analysis of Ascochyta pisi Provides Insights into the Pathogenesis of Ascochyta Blight of Pea

Liu

Song

et al. 2023

Microbiol Spectr

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Section: Resultsmentioning

confidence: 99%

Genome and Transcriptome Analysis of Ascochyta pisi Provides Insights into the Pathogenesis of Ascochyta Blight of Pea

Liu

Song

et al. 2023

Microbiol Spectr

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“…Fusarium wilt is a common vascular fungal disease that has a significant impact on crop failure and yield decline (Kuang et al, 2022; Zhang et al, 2023; Zhou et al, 2022). One pathogen causing the disease is Fusarium oxysporum , a worldwide distributed soil‐borne pathogenic fungus with flocculent colony processes and dense white hyphae (Li, 2019).…”

Section: Introductionmentioning

confidence: 99%

Combined analysis of microRNA and mRNA profiles provides insights into the pathogenic resistant mechanisms of the lotus rhizome rot

Zhao,

Tan,

Zhu

et al. 2023

Physiologia Plantarum

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Lotus rhizome rot caused by Fusarium oxysporum is a common vascular fungal disease in plants that significantly impacts the yield. However, only a few studies have studied the mechanism of Nelumbo nucifera responding to lotus rhizome rot. Here, we investigated the pathogenic genes and miRNAs in lotus rhizome rot to uncover the pathogenic resistant mechanisms by transcriptome and small RNA sequencing of lotus roots after inoculation with Fusarium oxysporum. GO and KEGG functional enrichment analysis showed that differential miRNAs were mostly enriched in starch and sucrose metabolism, biosynthesis of secondary metabolites, glutathione metabolism, brassinosteroid biosynthesis and flavonoid biosynthesis pathways. Twenty‐seven upregulated miRNAs, 19 downregulated miRNAs and their target genes were identified. Correlation analysis found that miRNAs negatively regulate target genes, which were also enriched in starch and sucrose metabolism and glutathione metabolism pathways. Their expression was measured by reverse transcription quantitative PCR (qRT‐PCR), and the results were consistent with the transcriptome analysis, thus verifying the reliability of transcriptome data. We selected three miRNAs (miRNA858‐y, miRNA171‐z and a novel miRNA novel‐m0005‐5p) to test the relationship between miRNAs and their target genes. The activity of the GUS testing assay indicated that miRNA could decrease the GUS activity by inhibiting the expression of their target genes. Collectively, this study provides a comprehensive analysis of transcriptome and small RNA sequencing of lotus root after inoculation with Fusarium oxysporum, and we identified candidate miRNAs and their target genes for breeding strategies of Nelumbo nucifera.

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Identification and characterization of Fusarium commune, a causal agent of lotus rhizome rot

et al. 2023

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Genome and Transcriptome Sequencing Analysis of Fusarium commune Provides Insights into the Pathogenic Mechanisms of the Lotus Rhizome Rot

Abstract: Fusarium commune is an important soilborne pathogen with a wide range of hosts and can cause Fusarium wilt of land plants. However, there are few studies on Fusarium wilt of aquatic plants.

Cited by 5 publications

References 65 publications

Genome and Transcriptome Analysis of Ascochyta pisi Provides Insights into the Pathogenesis of Ascochyta Blight of Pea

Genome and Transcriptome Analysis of Ascochyta pisi Provides Insights into the Pathogenesis of Ascochyta Blight of Pea

Combined analysis of microRNA and mRNA profiles provides insights into the pathogenic resistant mechanisms of the lotus rhizome rot

Identification and characterization of Fusarium commune, a causal agent of lotus rhizome rot

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