GenGNN: A Generic FPGA Framework for Graph Neural Network Acceleration

Stefan, Abi-Karam,; He, Yuan; Sarkar, Rishov; Sathidevi, Lakshmi; Qiao, Zihang; Hao, Cong

doi:10.48550/arxiv.2201.08475

Cited by 2 publications

(1 citation statement)

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“…[41] proposes a resource-efficient heterogeneous pipeline architecture for GNNs on HBM-enabled FPGAs. [42] proposes GenGNN, a generic GNN acceleration framework using High-Level Synthesis (HLS), aiming to deliver ultra-fast GNN inference and support a diverse set of GNN models. Results show their designs achieve millisecond level latency.…”

Section: Related Workmentioning

confidence: 99%

LL-GNN: Low Latency Graph Neural Networks on FPGAs for Particle Detectors

Que¹,

Loo²,

Fan³

et al. 2022

Preprint

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This work proposes a novel reconfigurable architecture for low latency Graph Neural Network (GNN) design specifically for particle detectors. Accelerating GNNs for particle detectors is challenging since it requires sub-microsecond latency to deploy the networks for online event selection in the Level-1 triggers at the CERN Large Hadron Collider experiments. This paper proposes a custom code transformation with strength reduction for the matrix multiplication operations in the interaction-network based GNNs with fully connected graphs, which avoids the costly multiplication of the adjacency matrix with the input feature matrix. It exploits sparsity patterns as well as binary adjacency matrices, and avoids irregular memory access, leading to a reduction in latency and improvement in hardware efficiency. In addition, we introduce an outer-product based matrix multiplication approach which is enhanced by the strength reduction for low latency design. Also, a fusion step is introduced to further reduce the design latency. Furthermore, an GNN-specific algorithm-hardware co-design approach is presented which not only finds a design with a much better latency but also finds a high accuracy design under a given latency constraint. Finally, a customizable template for this low latency GNN hardware architecture has been designed and open-sourced, which enables the generation of low-latency FPGA designs with efficient resource utilization using a high-level synthesis tool. Evaluation results show that our FPGA implementation is up to 24 times faster and consumes up to 45 times less power than a GPU implementation. Compared to our previous FPGA implementations, this work achieves 6.51 to 16.7 times lower latency. Moreover, the latency of our FPGA design is sufficiently low to enable deployment of GNNs in a sub-microsecond, real-time collider trigger system, enabling it to benefit from improved accuracy.

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Section: Related Workmentioning

confidence: 99%