Genetic variation of 17 autosomal STR loci in the Zhuang ethnic minority from Guangxi Zhuang Autonomous Region in the south of China

Guo, Fei; Li, Jun; Wei, Teju; Ye, Qiansu; Chen, Zucong

doi:10.1016/j.fsigen.2017.03.015

Cited by 14 publications

(5 citation statements)

References 18 publications

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“…Ha Hlai, a branch of Hainan Hlai, speaks Ha Hlai localism which is a branch of Tai‐Kadai language generally belongs to the Sino‐Tibetan language family. To illustrate the genetic differences of the Sino‐Tibetan language‐speaking populations, especially for the Ha Hlai, we established a database which included 49 populations with Sino‐Tibetan language (30 Chinese/Sinitic, 8 Tai‐Kadai, 6 Tibeto‐Burman, and 5 Hmong‐Mien language‐speaking population, totally 60,347 individuals) to perform PCA based on allelic frequencies of the same 19 autosomal STRs (Bai et al, 2017; Chan, Chiu, Tsui, Wong, & Fung, 2005; Chen Chunbao, Tian Xin, & Hanhua, 2017; Chen et al, 2017; Chen, Zhu, Shiming, You, & Ma, 2010; Deng et al, 2007; Fan, Wang, Chen, et al, 2019; Fan, Wang, Ren, et al, 2019; Ferdous et al, 2010; Guo, 2017; Guo, Li, Wei, Ye, & Chen, 2017; He et al, 2017; Hongdan et al, 2017; Huihui Lian, Lin, & Li, 2015; Jingzhou Wang, Zhai, Wang, Zhang, & Wang, 2015; Kraaijenbrink, van Driem, Tshering of Gaselô, & de Knijff, 2007; Le Wang, Zhang, Bai, & Ye, 2013; Li, Zheng, & Jun, 2017; Li et al, 2015, 2018; Liao et al, 2019; Lili Zhang et al, 2017; Liu, Liu, & Wang, 2006a, 2006b; Liu, Chen, Huang, et al, 2017; Liu, Chen, Mei, et al, 2017; Meng Pan et al, 2012; Qiuling Liu, Huiling, & Chen, 2003; Shen, Kang, Dong, Guo, & Wang, 2015; Sun et al, 2017; Sun, Zhang, Wu, Shen, & Wu, 2015; Wenming Han, 2016; Xiao, Zhang, Wei, Pan, & Huang, 2016; Xie et al, 2014; Xiuzi & Changchun, 2017; Xu, Feng, & Yao, 2017; Xu, Xu, Wang, & Yao, 2017; Yang et al, 2017, 2018; Yao et al, 2016; Zhang, 2015; Zhang, Zhao, Guo, Liu, & Wang, 2015; Zhang et al, 2013, 2018; Zhang, Du, et al, 2017; Zhang, Hu, Du, Nie, et al,…”

Section: Resultsmentioning

confidence: 99%

RETRACTED: Forensic characteristics and phylogenetic analyses of one branch of Tai‐Kadai language‐speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia^™ Platinum System

Wang

et al. 2020

Molec Gen & Gen Med

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Section: Resultsmentioning

confidence: 99%

RETRACTED: Forensic characteristics and phylogenetic analyses of one branch of Tai‐Kadai language‐speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia^™ Platinum System

Wang

et al. 2020

Molec Gen & Gen Med

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“…Even so, we find that DYS438, DYS391, DYS437 and DYS645 loci exhibit relatively low genetic diversities in the studied population. Similar results are also observed in Hunan Zhuang and Guangxi Zhuang populations ( Feng et al, 2020 ; Guo et al, 2017a ). We infer that these four Y-STRs might be selected for forensic application in European populations because these loci exhibit relatively high GD values in European populations, especially for DYS391, DYS437 and DYS438 loci ( Hallenberg et al, 2005 ; Pickrahn et al, 2016 ).…”

Section: Discussionsupporting

confidence: 85%

“…These Dongs are mainly distributed in southeastern Guizhou Province and adjacent to Guangxi Zhuang Autonomous Region and Hunan Province ( ). So far, some genetic data on the Y-STRs of Hunan Dong ( Feng et al, 2020 ), the autosomal STRs of Guangxi Dong ( Guo et al, 2017a ) and the mitochondrial DNA of Guizhou Dong ( Ren et al, 2022 ) have been reported. However, there are no studies on the Y-STRs of the Dong population in Guizhou.…”

Section: Introductionmentioning

confidence: 99%

Comprehensive analyses of genetic diversities and population structure of the Guizhou Dong group based on 44 Y-markers

Zhang,

Huang,

Jin

et al. 2023

PeerJ

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Background The non-recombining region of the human Y chromosome (NRY) is a strictly paternally inherited genetic marker and the best material to trace the paternal lineages of populations. Y chromosomal short tandem repeat (Y-STR) is characterized by high polymorphism and paternal inheritance pattern, so it has been widely used in forensic medicine and population genetic research. This study aims to understand the genetic distribution of Y-STRs in the Guizhou Dong population, provide reference data for forensic application, and explore the phylogenetic relationships between the Guizhou Dong population and other comparison populations. Methods Based on the allele profile of 44 Y-markers in the Guizhou Dong group, we estimate their allele frequencies and haplotype frequencies. In addition, we also compare the forensic application efficiency of different Y-STR sets in the Guizhou Dong group. Finally, genetic relationships among Guizhou Dong and other reference populations are dissected by the multi-dimensional scaling and the phylogenetic tree. Results A total of 393 alleles are observed in 312 Guizhou Dong individuals for these Y-markers, with allele frequencies ranging from 0.0032 to 0.9679. The haplotype diversity and discriminatory capacity for these Y-markers in the Guizhou Dong population are 0.99984 and 0.97440, respectively. The population genetic analyses of the Guizhou Dong group and other reference populations show that the Guizhou Dong group has the closest genetic relationship with the Hunan Dong population, and followed by the Guizhou Tujia population. Conclusions In conclusion, these 44 Y-markers can be used as an effective tool for male differentiation in the Guizhou Dong group. The haplotype data in this study not only enrich the Y-STR data of different ethnic groups in China, but also have important significance for population genetics and forensic research.

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“…We used CLUMPAK 28 and DISTRUCT 29 to generate the final results of STRU CTU RE. To evaluate genetic relatedness with other Asian populations, we used POPTREE v.2 30 to generate a neighbor-joining (NJ) tree based on F st computation by allele frequency of 15 STR loci of 29 populations from South and Southeast Asia 8,9,11,12,14,[31][32][33][34][35][36][37][38][39] .…”

Section: Methodsmentioning

confidence: 99%

Forensic and genetic characterizations of diverse southern Thai populations based on 15 autosomal STRs

Srikummool

Srithawong

Muisuk

et al. 2022

Sci Rep

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Southern Thailand is home to various populations; the Moklen, Moken and Urak Lawoi’ sea nomads and Maniq negrito are the minority, while the southern Thai groups (Buddhist and Muslim) are the majority. Although previous studies have generated forensic STR dataset for major groups, such data of the southern Thai minority have not been included; here we generated a regional forensic database of southern Thailand. We newly genotyped common 15 autosomal STRs in 184 unrelated southern Thais, including all minorities and majorities. When combined with previously published data of major southern Thais, this provides a total of 334 southern Thai samples. The forensic parameter results show appropriate values for personal identification and paternity testing; the probability of excluding paternity is 0.99999622, and the combined discrimination power is 0.999999999999999. Probably driven by genetic drift and/or isolation with small census size, we found genetic distinction of the Maniq and sea nomads from the major groups, which were closer to the Malay and central Thais than the other Thai groups. The allelic frequency results can strength the regional forensic database in southern Thailand and also provide useful information for anthropological perspective.

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Genetic variation of 17 autosomal STR loci in the Zhuang ethnic minority from Guangxi Zhuang Autonomous Region in the south of China

Cited by 14 publications

References 18 publications

RETRACTED: Forensic characteristics and phylogenetic analyses of one branch of Tai‐Kadai language‐speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia^™ Platinum System

RETRACTED: Forensic characteristics and phylogenetic analyses of one branch of Tai‐Kadai language‐speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia^™ Platinum System

Comprehensive analyses of genetic diversities and population structure of the Guizhou Dong group based on 44 Y-markers

Forensic and genetic characterizations of diverse southern Thai populations based on 15 autosomal STRs

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Genetic variation of 17 autosomal STR loci in the Zhuang ethnic minority from Guangxi Zhuang Autonomous Region in the south of China

Cited by 14 publications

References 18 publications

RETRACTED: Forensic characteristics and phylogenetic analyses of one branch of Tai‐Kadai language‐speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia™ Platinum System

RETRACTED: Forensic characteristics and phylogenetic analyses of one branch of Tai‐Kadai language‐speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia™ Platinum System

Comprehensive analyses of genetic diversities and population structure of the Guizhou Dong group based on 44 Y-markers

Forensic and genetic characterizations of diverse southern Thai populations based on 15 autosomal STRs

Contact Info

Product

Resources

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RETRACTED: Forensic characteristics and phylogenetic analyses of one branch of Tai‐Kadai language‐speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia^™ Platinum System

RETRACTED: Forensic characteristics and phylogenetic analyses of one branch of Tai‐Kadai language‐speaking Hainan Hlai (Ha Hlai) via 23 autosomal STRs included in the Huaxia^™ Platinum System