Genetic variation among date plum (Diospyros lotus) genotypes in Turkey

Yıldırım, Nalan; Erċışlı, Sezai; Ağar, Güleray; Orhan, Emine; Hizarci, Y

doi:10.4238/vol9-2gmr787

Cited by 7 publications

(5 citation statements)

References 12 publications

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“…Generally, we observed a low level of intraspecific genetic diversity in D. lotus; many ISSR and SCoT bands were monomorphic. On the other hand, other researchers detected more than 90% genetic polymorphism in D. lotus [2,34,36]. They reported an abundant phenotypic and genetic diversity among different D. lotus varieties worldwide.…”

Section: Efficiency Of Issr and Scot Markers Intraspecific Diversity ...mentioning

confidence: 96%

“…This is consistent with Gorji et al (2011), who also demonstrated that the SCoT technique was more efficient than the ISSR technique [47] for persimmon genotyping. SCoT markers are considered as "molecular marker genes" because they associated with start codons ATG and amplify the sequence between two different genes, and so could provide more information for breeding [2,34,36,48]. On the other hand, some studies on different plant species showed that ISSR markers were always more polymorphic than SCoTs [42,[49][50][51].…”

Section: Efficiency Of Issr and Scot Markers Intraspecific Diversity ...mentioning

confidence: 99%

“…Natural populations of D. lotus have a fragmented character of distribution in this region. D. lotus is the most cold-tolerant species in the genus Diospyros and is important for the development of new cold-tolerant varieties and is often used as a cold-tolerant rootstock for D. kaki, allow them to survive extreme temperatures down to −20 • C, with good yields [1,2]. This species is important as a genetic resource in breeding programs aimed at cold tolerance and early harvesting [3][4][5][6].…”

Section: Introductionmentioning

confidence: 99%

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Population Analysis of Diospyros lotus in the Northwestern Caucasus Based on Leaf Morphology and Multilocus DNA Markers

Самарина

Malyarovskaya

Rakhmangulov

et al. 2022

IJMS

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Diospyros lotus is the one of the most frost-tolerant species in the Diospyros genera, used as a rootstock for colder regions. Natural populations of D. lotus have a fragmented character of distribution in the Northwestern Caucasus, one of the coldest regions of Diospyros cultivation. To predict the behavior of D. lotus populations in an extreme environment, it is necessary to investigate the intraspecific genetic diversity and phenotypic variability of populations in the colder regions. In this study, we analyzed five geographically distant populations of D. lotus according to 33 morphological leaf traits, and the most informative traits were established, namely, leaf length, leaf width, leaf index (leaf to length ratio) and the length of the fourth veins. Additionally, we evaluated the intraspecific genetic diversity of D. lotus using ISSR and SCoT markers and proposed a new parameter for the evaluation of genetic polymorphism among populations, in order to eliminate the effect of sample number. This new parameter is the relative genetic polymorphism, which is the ratio of polymorphism to the number of samples. Based on morphological and genetic data, the northernmost population from Shkhafit was phenotypically and genetically distant from the other populations. The correspondence between several morphological traits (leaf width, leaf length and first to fifth right vein angles) and several marker bands (SCoT5, SCoT7, SCoT30: 800–1500 bp; ISSR13, ISSR14, ISSR880: 500–1000 bp) were observed for the Shkhafit population. Unique SCoT and ISSR fragments can be used as markers for breeding purposes. The results provide a better understanding of adaptive mechanisms in D. lotus in extreme environments and will be important for the further expansion of the cultivation area for persimmon in colder regions.

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Section: Efficiency Of Issr and Scot Markers Intraspecific Diversity ...mentioning

confidence: 96%

Section: Efficiency Of Issr and Scot Markers Intraspecific Diversity ...mentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

See 1 more Smart Citation

Population Analysis of Diospyros lotus in the Northwestern Caucasus Based on Leaf Morphology and Multilocus DNA Markers

Самарина

Malyarovskaya

Rakhmangulov

et al. 2022

IJMS

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“…Various botanical gardens are widely cultivated it. The fruits of this species are also used in folk medicine for vitamin deficiencies, gastrointestinal diseases [4,5,6]. In addition, this species is often used as a rootstock for persimmons, especially in places with a high content of chloride salinization and on limestones [7,8].…”

Section: Introductionmentioning

confidence: 99%

Intrapopulation variability of fruit quantitative traits Diospyros lotus L. in the Inner Mountain Dagestan

Анатов

Максим

2022

BIO Web Conf.

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The cenopopulation of Gimry village in Untsukulsky district of Inner Mountain Dagestan was employed for the first time to analyze intrapopulation variability of Diospyros lotus quantitative traits of fruit. In view of this study were selected 10 random trees in a mature generative stage. It has been made measurements with 30 fruits by 14 morphological and 6 index traits. The multidimensional scaling and cluster analysis have revealed two clusters on the large-fruited (large-fruited and small-fruited) significantly differed in the t-test. The interindividual variability was higher than intraindividual to most studied traits, which may be associated with high genotypic heterogeneity of this population. The analysis of variability by the coefficient of variation (CV, %) and dispersion components (h2,%) has shown the most stable and variable traits. The greatest constancy has found for traits of seed thickness and the calyx index, the smallest – for weighted traits in all degree of variation. The traits of small-fruited trees were strongly correlated and for large-fruited trees – weakly. It has been identified main regularities for the indices variability. The fruit mass, flesh mass and seed mass has same character of correlations with other traits on intraindividual and interindividual levels.

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“…The species is a deciduous tree and its maximum heights 15 m. It spreads naturally in the Northeast and South regions of Turkey. The fruit is a globose shape which is about from 1.5 to 2.0 cm in diameter and immature and ripe fruits are yellow and bluish-black color, respectively [17][18][19]. Some studies were performed to determine both the biological activities and the chemical composition of the D. lotus [15,16,[20][21][22][23][24].…”

Section: Introductionmentioning

confidence: 99%

RP-HPLC-UV Analysis of the Phenolic Compounds, Antimicrobial Activity Against Multi-Drug Resistant Bacteria and Antioxidant Activity of Fruit and Seed of Diospyros lotus L.ctivity of Fruit and Seed of Diospyros lotus L.

Akar

Karakurt

Okumuş

et al. 2020

International Journal of Secondary Metabolite

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The object of the present study was to investigate the antioxidant, antimicrobial activity and phenolic compounds of fruit and seeds of Diospyros lotus L. The fruits consumed by humans as nutrients were harvested from the plants that grow naturally in the province of Trabzon-Akçaabat, Eastern Black Sea Region of Turkey. The antioxidant activities of fruit and seeds of Diospyros lotus were determined by using four methods (% DPPH radical scavenging activity, FRAP antioxidant power determination, CUPRAC reducing antioxidant activity and total phenolic content (TPC) in five different proportion of methanol-water extracts. All extracts of fruit and seeds of D. lotus analyzed through whole antioxidant analysis methods showed significant antioxidant activity. In addition, antimicrobial activity of fruit and seeds extracted with DMSO was determined against seven standard bacteria and three multi-drug resistance clinical strains. Although fruit extracts did not have the antimicrobial activity against bacteria, seeds showed antimicrobial effect to both standard strains (Gram-negative and Gram-positive) and antibiotic resistance clinical isolates (Klebsiella pneumoniae carrying blaKPC, Acinetobacter baumannii, harboring blaOXA-23 gene and resistance to colistin, and multi-drug resistant Pseudomonas aeruginosa). MICs' value of plant seed extracts for standard strains was 0.75-25 mg/mL and antibiotic resistant clinical bacteria were 12.5 and 25 mg/mL. Additionally, phenolic compounds in methanol extracts of fruit and seeds were also determined in by HPLC using 19 standards. Gallic acid and chrysin phenolic compounds were the major phenolic compounds in fruit and seeds, respectively.

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Genetic variation among date plum (Diospyros lotus) genotypes in Turkey

Cited by 7 publications

References 12 publications

Population Analysis of Diospyros lotus in the Northwestern Caucasus Based on Leaf Morphology and Multilocus DNA Markers

Population Analysis of Diospyros lotus in the Northwestern Caucasus Based on Leaf Morphology and Multilocus DNA Markers

Intrapopulation variability of fruit quantitative traits Diospyros lotus L. in the Inner Mountain Dagestan

RP-HPLC-UV Analysis of the Phenolic Compounds, Antimicrobial Activity Against Multi-Drug Resistant Bacteria and Antioxidant Activity of Fruit and Seed of Diospyros lotus L.ctivity of Fruit and Seed of Diospyros lotus L.

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