“…Later, in a study focused on Atlantic Spanish and Portuguese coasts using microsatellites, Cruz et al discovered an increased genetic differentiation of two populations located on the coasts of central Portugal, with respect to those from Rias Baixas and the Bay of Biscay (including one population from Rias Medias) [14]. Amane et al [15] studied seven populations from Moroccan coasts with microsatellites and found a significant genetic differentiation of populations located south of parallel 25 • N. Finally, Saavedra et al [16] scored four populations for intron polymorphisms. They studied one population in southern France, an area that had not been studied before with nuclear markers, where they found alleles typical of the eastern Mediterranean in very low frequency.…”
The grooved carpet-shell clam is one of the most economically relevant shellfish species living in the Mediterranean and nearby Atlantic coasts. Previous studies using different types of genetic markers showed a remarkable genetic divergence of the eastern Mediterranean, western Mediterranean, and Atlantic populations, but important details remained unclear. Here, data from six nuclear introns scored for restriction fragment size polymorphisms in eight populations that have not been studied before have been pooled for the analysis with data scattered through three previous studies, totaling 32 samples from 29 locations. The results show lower levels of heterozygosity, higher mean number of alleles, and alleles with restricted distribution in the Mediterranean populations, suggesting the existence of a large, isolated population in the eastern Mediterranean at the middle Pleistocene. The data also confirm the similarity of populations from Tunisia to Western Mediterranean populations. Finally, a genetic mosaic is apparent in the Atlantic coasts of the Iberian Peninsula, with a divergence of Rias Baixas populations from more northern populations and Central Portugal populations. The effects of oceanic fronts, seasonal upwellings, river plumes, and/or fishery management operations could explain this and other features of the Atlantic populations.
“…Later, in a study focused on Atlantic Spanish and Portuguese coasts using microsatellites, Cruz et al discovered an increased genetic differentiation of two populations located on the coasts of central Portugal, with respect to those from Rias Baixas and the Bay of Biscay (including one population from Rias Medias) [14]. Amane et al [15] studied seven populations from Moroccan coasts with microsatellites and found a significant genetic differentiation of populations located south of parallel 25 • N. Finally, Saavedra et al [16] scored four populations for intron polymorphisms. They studied one population in southern France, an area that had not been studied before with nuclear markers, where they found alleles typical of the eastern Mediterranean in very low frequency.…”
The grooved carpet-shell clam is one of the most economically relevant shellfish species living in the Mediterranean and nearby Atlantic coasts. Previous studies using different types of genetic markers showed a remarkable genetic divergence of the eastern Mediterranean, western Mediterranean, and Atlantic populations, but important details remained unclear. Here, data from six nuclear introns scored for restriction fragment size polymorphisms in eight populations that have not been studied before have been pooled for the analysis with data scattered through three previous studies, totaling 32 samples from 29 locations. The results show lower levels of heterozygosity, higher mean number of alleles, and alleles with restricted distribution in the Mediterranean populations, suggesting the existence of a large, isolated population in the eastern Mediterranean at the middle Pleistocene. The data also confirm the similarity of populations from Tunisia to Western Mediterranean populations. Finally, a genetic mosaic is apparent in the Atlantic coasts of the Iberian Peninsula, with a divergence of Rias Baixas populations from more northern populations and Central Portugal populations. The effects of oceanic fronts, seasonal upwellings, river plumes, and/or fishery management operations could explain this and other features of the Atlantic populations.
“…However, grooved carpet-shell populations have encountered numerous challenges, such as overexploitation; mainly caused by high commercial demand, leading to an effective decline in their population. Moreover, coastal development and pollution, disrupt the natural environments which reduce suitable areas for their growth and reproduction, and disease outbreaks [5,6,7]. Consequently, it is imperative to implement conservation efforts and sustainable management practices to ensure the longterm viability of this important species [8].…”
Larval rearing is a critical phase in bivalve hatchery production and plays a crucial role in the success of spat production. Therefore, understanding the effect of density on larval performance and post-larvae settlement is crucial for optimizing and improving the success of bivalve hatchery production. This study aimed to evaluate the effect of different stocking density on larval performances and settlement rate of clams Ruditapes decussatus. Three different larval rearing densities (10, 20, and 40 larvae/mL) and four settlement densities (35, 70, 100, and 140 larvae/cm²) were studied. The results regarding larval performance showed that high density resulted in low larval survival (18% for D40) compared to low and moderate densities (23% for D10 and 26% for D20, respectively). In terms of post-larvae settlement, a density of 35 larvae/cm² exhibited the highest fixation rate (36%) compared to 33%, 18%, and 9% at 70, 100, and 140 larvae/cm², respectively. Statistical analysis revealed a significant effect of larval density on both survival and growth (F = 11.79, p < 0.05; F = 18.63, p < 0.05, respectively), as well as a highly significant effect on settlement (F = 14.88, p < 0.001). Overall, it is advisable to maintain moderate densities during both larval performance and post-larvae settlement for seed production of R. decussatus in the hatchery.
“…Although increasing attention has been paid to a new generation of molecular markers such as SNPs with the development of high-throughput sequencing, a previous study [6] suggested that SSRs provide more information concerning genetic diversity and perform better at estimating relative kinship than SNPs. SSRs have been used to monitor genetic variation in marine organisms such as Norway Lobster (Nephrops norvegicus) [7], Pacific oyster (Crassostrea gigas) [8], grooved carpet shell clam (Ruditapes decussatus) [9], Nile Tilapia (Oreochromis niloticus) [10], summer flounder (Paralichthys dentatus) [11], and pike-perch (Sander lucioperca) [12]. To date, hundreds of SSRs have been identified and utilized to examine the current status of germplasm resources of wild or hatchery stocks in shrimp species such as Fenneropenaeus chinensis [13], F. indicus [14], Penaeus japonicus [15], P. monodon [16], P. notialis [17], and L. vannamei [18].…”
The whiteleg shrimp (Litopenaeus vannamei) is one of the most economically important aquaculture species in China. Genetic diversity is crucial for maintaining the gene pool of farmed shrimp. In this study, the effects of artificial selection on the genetic structure of four whiteleg shrimp strains were evaluated using microsatellite sequences. The results showed that the observed heterozygosity (Ho), expected heterozygosity (He), and the polymorphism information content (PIC) of the four selected strains ranged from 0.446 to 0.574, 0.450 to 0.566, and 0.435 to 0.509, respectively. All the selected strains maintained a moderate level of genetic diversity. Most inbreeding coefficients (Fis) in the four strains were positive but not significantly different from zero, indicating a relatively low degree of inbreeding within each strain. However, He and PIC in line 5 showed a decreasing trend from the 2017 to the 2019 generations, and Fis in line 10 showed a significant increasing trend across generations, indicating that measures must be taken to maintain the level of genetic diversity for lines 5 and 10. UPGMA cluster trees showed that the four breeding lines had apparent genetic differences, which could provide a genetic basis for studying crossbreeding between selective lines and the utilization of heterosis. This study will be useful for population genetic research and the breeding strategies of whiteleg shrimp.
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