Genetic structure and viability selection in the golden eagle (Aquila chrysaetos), a vagile raptor with a Holarctic distribution

Doyle, Jacqueline; Katzner, Todd E.; Roemer, Gary W.; Cain, James W.; Millsap, Brian A.; McIntyre, Carol L.; Sonsthagen, Sarah A.; Fernandez, Nadia B.; Wheeler, Maria; Bulut, Zafer; Bloom, Peter H.; DeWoody, J. Andrew

doi:10.1007/s10592-016-0863-0

Cited by 39 publications

(58 citation statements)

References 84 publications

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“…Additional sampling is needed to verify whether these are truly private haplotypes or just an artifact of limited sampling. In a recent genetic analysis of golden eagles in NA, Doyle et al [14] also found 3% variation partitioned among their four geographic sampling sites (California, Alaska, western states, eastern states) and 97% within those sites. Their preliminary results provided evidence for significant genetic differentiation between California and other western states (Arizona, Colorado, Nebraska, New Mexico, Utah, Wyoming).…”

Section: Discussionmentioning

confidence: 99%

“…Similarly, our findings of a significant deviation from panmixia at nDNA Fst and private alleles at multiple microsatellite loci suggest that gene flow is restricted to some degree between California and Idaho. Thus, it may be possible to distinguish eagles from different breeding grounds by analyzing additional loci as was demonstrated in Doyle et al [14]. The recent completion of a genome sequence for golden eagles [53] and the identification of neutral and adaptive SNPs [14] will facilitate future analyses.…”

Section: Discussionmentioning

confidence: 99%

“…However, multiple reintroductions of eagles from the western populations to the Eastern US may have altered allele frequency distributions and artificially elevated connectivity in the sampled populations [18]. Distance and natural geographic barriers can reduce gene flow in populations [14]. However, recent experimental evidence indicates that the degree of connectivity in populations of migratory animals can increase as a result of habitat loss, and that geographic populations at sites not directly connected to the habitat loss can be affected [54].…”

Section: Discussionmentioning

confidence: 99%

“…Genetic analyses can identify metapopulations, subpopulations, source and sink populations, and investigate migratory connectivity, changes in phylogeographic patterns in response to climate change and other biological or evolutionary differences among population segments [1,3–11]. Genetic analyses of North American (NA) raptors have generally shown high levels of contemporary gene flow and a low degree of genetic structure across large spatial scales [7,12,13], but recent research by Doyle et al [14] using 162 single nucleotide polymorphisms (SNPs) at neutral and adaptive loci indicate that golden eagles in NA may exhibit some structure across their range.…”

Section: Introductionmentioning

confidence: 99%

“…canadensis ) occurs, Katzner et al [18] report that eagles from east of the Mississippi River exhibited some degree of geographic isolation from those westward prior to reintroductions, and historically might have been genetically distinct. More recently, Doyle et al [14] found pronounced genetic structure among golden eagles from four geographic sampling sites in NA.…”

Section: Introductionmentioning

confidence: 99%

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Nuclear and Mitochondrial DNA Analyses of Golden Eagles (Aquila chrysaetos canadensis) from Three Areas in Western North America; Initial Results and Conservation Implications

Craig¹,

Adams

Waits

et al. 2016

PLoS ONE

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Understanding the genetics of a population is a critical component of developing conservation strategies. We used archived tissue samples from golden eagles (Aquila chrysaetos canadensis) in three geographic regions of western North America to conduct a preliminary study of the genetics of the North American subspecies, and to provide data for United States Fish and Wildlife Service (USFWS) decision-making for golden eagle management. We used a combination of mitochondrial DNA (mtDNA) D-loop sequences and 16 nuclear DNA (nDNA) microsatellite loci to investigate the extent of gene flow among our sampling areas in Idaho, California and Alaska and to determine if we could distinguish birds from the different geographic regions based on their genetic profiles. Our results indicate high genetic diversity, low genetic structure and high connectivity. Nuclear DNA Fst values between Idaho and California were low but significantly different from zero (0.026). Bayesian clustering methods indicated a single population, and we were unable to distinguish summer breeding residents from different regions. Results of the mtDNA AMOVA showed that most of the haplotype variation (97%) was within the geographic populations while 3% variation was partitioned among them. One haplotype was common to all three areas. One region-specific haplotype was detected in California and one in Idaho, but additional sampling is required to determine if these haplotypes are unique to those geographic areas or a sampling artifact. We discuss potential sources of the high gene flow for this species including natal and breeding dispersal, floaters, and changes in migratory behavior as a result of environmental factors such as climate change and habitat alteration. Our preliminary findings can help inform the USFWS in development of golden eagle management strategies and provide a basis for additional research into the complex dynamics of the North American subspecies.

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Section: Discussionmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

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Nuclear and Mitochondrial DNA Analyses of Golden Eagles (Aquila chrysaetos canadensis) from Three Areas in Western North America; Initial Results and Conservation Implications

Craig¹,

Adams

Waits

et al. 2016

PLoS ONE

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Influences of multilocus heterozygosity on size during early life

Feiner

DeWoody

Breck

et al. 2017

Ecology and Evolution

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Genetic diversity has been hypothesized to promote fitness of individuals and populations, but few studies have examined how genetic diversity varies with ontogeny. We examined patterns in population and individual genetic diversity and the effect of genetic diversity on individual fitness among life stages (adults and juveniles) and populations of captive yellow perch (Perca flavescens) stocked into two ponds and allowed to spawn naturally. Significant genetic structure developed between adults and offspring in a single generation, even as heterozygosity and allelic richness remained relatively constant. Heterozygosity had no effect on adult growth or survival, but was significantly and consistently positively related to offspring length throughout the first year of life in one pond but not the other. The largest individuals in the pond exhibiting this positive relationship were more outbred than averaged size individuals and also more closely related to one another than they were to average-sized individuals, suggesting potential heritability of body size or spawn timing effects. These results indicate that the influence of heterozygosity may be mediated through an interaction, likely viability selection, between ontogeny and environment that is most important during early life. In addition, populations may experience significant genetic change within a single generation in captive environments, even when allowed to reproduce naturally.Accounting for the dynamic influences of genetic diversity on early life fitness could lead to improved understanding of recruitment and population dynamics in both wild and captive populations. K E Y W O R D Saquaculture, fish, heterozygosity-fitness correlation, microsatellite, Perca flavescens, relatedness

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Sea surface temperature, rather than land mass or geographic distance, may drive genetic differentiation in a species complex of highly dispersive seabirds

Torres

Pante

González‐Solís

et al. 2021

Ecology and Evolution

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Seabirds, particularly Procellariiformes, are highly mobile organisms with a great capacity for long dispersal, though simultaneously showing high philopatry, two conflicting life‐history traits that may lead to contrasted patterns of genetic population structure. Landmasses were suggested to explain differentiation patterns observed in seabirds, but philopatry, isolation by distance, segregation between breeding and nonbreeding zones, and oceanographic conditions (sea surface temperatures) may also contribute to differentiation patterns. To our knowledge, no study has simultaneously contrasted the multiple factors contributing to the diversification of seabird species, especially in the gray zone of speciation. We conducted a multilocus phylogeographic study on a widespread seabird species complex, the little shearwater complex, showing highly homogeneous morphology, which led to considerable taxonomic debate. We sequenced three mitochondrial and six nuclear markers on all extant populations from the Atlantic (lherminieri) and Indian Oceans (bailloni), that is, five nominal lineages from 13 populations, along with one population from the eastern Pacific Ocean (representing the dichrous lineage). We found sharp differentiation among populations separated by the African continent with both mitochondrial and nuclear markers, while only mitochondrial markers allowed characterizing the five nominal lineages. No differentiation could be detected within these five lineages, questioning the strong level of philopatry showed by these shearwaters. Finally, we propose that Atlantic populations likely originated from the Indian Ocean. Within the Atlantic, a stepping‐stone process accounts for the current distribution. Based on our divergence time estimates, we suggest that the observed pattern of differentiation mostly resulted from historical and current variation in sea surface temperatures.

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Genetic structure and viability selection in the golden eagle (Aquila chrysaetos), a vagile raptor with a Holarctic distribution

Cited by 39 publications

References 84 publications

Nuclear and Mitochondrial DNA Analyses of Golden Eagles (Aquila chrysaetos canadensis) from Three Areas in Western North America; Initial Results and Conservation Implications

Nuclear and Mitochondrial DNA Analyses of Golden Eagles (Aquila chrysaetos canadensis) from Three Areas in Western North America; Initial Results and Conservation Implications

Influences of multilocus heterozygosity on size during early life

Sea surface temperature, rather than land mass or geographic distance, may drive genetic differentiation in a species complex of highly dispersive seabirds

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