Objective Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that preferentially catalyzes the S-methylation of aromatic and heterocyclic sulfhydryl compounds, including Azathioprine (AZA). It has been reported that the level ofAZA toxicity is dependent on the TPMT genotypes in Caucasian individuals; we thus investigated this relationship in Japanese. Methods The TPMTgenotype was determined using peripheral blood cell DNAobtained from 36 Japanese patients with rheumatic diseases who were treated with AZA,by polymerase chain reaction (PCR) technique. Duration ofAZAadministration, white blood cell counts before and after AZAadministration, and side effects were investigated in each subject, and were compared between the patients with or without TPMTmutation. Results The TPMTallelotype was TPMT*1ITPMT*1 in 33 (91.7%) and TPMT*1/TPMT*3Cin 3 (8.3%) individuals.All 3 patients (100%) with the mutant TPMTallele (TPMT*3C) discontinued AZAtreatment due to leucopenia while only 4 patients (12%) without mutant TPMTalleles showed leucopenia (p=0.0049, Fisher's exact test). However, leucopenia developed relatively late in patients with mutant TPMT. Conclusion The TPMTmutant allele, TPMT*3C,also exists in Japanese individuals, and the bone marrow toxicity of AZAis likely stronger in patients with this mutant allele. (Internal Medicine 38: 944-947, 1999)