Genetic mapping and quantitative trait locus analysis of fiber quality traits using a three-parent composite population in upland cotton (Gossypium hirsutum L.)

Zhang, Ke; Zhang, Jian; Ma, Jun; Tang, Shiyi; Liu, Dajun; Teng, Zhonghua; Liu, Dexin; Zhang, Zhengsheng

doi:10.1007/s11032-011-9549-y

Cited by 99 publications

(72 citation statements)

References 32 publications

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“…Here we found many common characteristics of QTLs related to fiber quality traits as described in the previous reports involving interspecific maps [3,10,23,[33][34][35][36][37][38] and intraspecific maps [12,15,26,30,[39][40][41][42][43][44][45][46], although few common markers were used in the present research and the previous studies, and the maps covered different region parts of cotton genome, making it difficult to compare the common QTLs, some QTLs were detected and mapped on the same chromosomes and affect common traits. These include seven QTLs for fiber length located in the same chromosomal regions as reported earlier [10,26,34,41,42], two QTLs for fiber uniformity ratio located in the same chromosomal regions [43,46], two QTLs for fiber micronaire [10,43,44], three QTLs for fiber elongation [30,36,42,43,46,47], and 4 QTLs for fiber strength [26,34,36,43,44,46,47].…”

Section: Qtls For Cotton Fiber Quality Traitssupporting

confidence: 75%

“…Markers underlined were published previously. 15.93% of PV in the 08Qz and 08Hj environments, respectively. This QTL were also detected in the combined analysis.…”

Section: Qtl Mapping For Fiber Quality Traitsmentioning

confidence: 96%

“…More recently, Zhang et al [15] developed a composite crossing population in upland cotton and constructed a genetic map spanned 4184.4 cm, covering approximately 94.1% of the entire tetraploid cotton genome and containing 978 simple sequence repeat (SSR) loci. A draft physical map of a D-genome cotton species (Gossypium raimondii Ulbr., D5) has been completed [16][17][18] and the G. hirsutum genome is being sequenced (http://www.monsanto.com/newsviews/Pages/Monsanto-Illumina-Key-Milestone-Cotton-Ge nome-Sequencing.aspx), which will provide rich SSR markers and functional markers for construction of high-density genetic linkage map and QTL mapping for fiber quality traits to facilitate MAS.…”

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confidence: 99%

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Construction of a linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.)

Liang

Hua

et al. 2013

Chin. Sci. Bull.

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With the development in spinning technology, the improvement of cotton fiber quality is becoming more and more important. The main objective of this research was to construct a high-density genetic linkage map to facilitate marker assisted selection for fiber quality traits in upland cotton (Gossypium hirsutum L.). A genetic linkage map comprising 421 loci and covering 3814.3 cM, accounting for approximately 73.35% of the cotton genome, was constructed using an F 2 population derived from cross GX1135 (P 1 )×GX100-2 (P 2 ). Forty-four of 49 linkage groups were assigned to the 26 chromosomes. Fiber quality traits were investigated in F 2 population sampled from individuals, and in F 2:3 , and F 2:4 generations sampled by lines from two sites and one respectively, and each followed a randomized complete block design with two replications. Thirty-nine quantitative trait loci were detected for five fiber quality traits with data from single environments (separate analysis each): 12 for fiber length, five for fiber uniformity, nine for fiber strength, seven for fiber elongation, and six for fiber micronaire, whereas 15 QTLs were found in combined analysis (data from means of different environments in F 2:3 generation). Among these QTLs, qFL-chr5-2 and qFL-chr14-2 for fiber length were detected simultaneously in three generations (four environments) and verified further by combined analysis, and these QTLs should be useful for marker assisted selection to improve fiber quality in upland cotton.upland cotton (Gossypium hirsutum L.), fiber quality traits, genetic linkage map, marker assisted selection, QTLs Citation:Liang Q Z, Hu C, Hua H, et al. Construction of a linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.). Chin Sci Bull, 2013, 58: 32333243,

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Section: Qtls For Cotton Fiber Quality Traitssupporting

confidence: 75%

“…Markers underlined were published previously. 15.93% of PV in the 08Qz and 08Hj environments, respectively. This QTL were also detected in the combined analysis.…”

Section: Qtl Mapping For Fiber Quality Traitsmentioning

confidence: 96%

mentioning

confidence: 99%

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Construction of a linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.)

Liang

Hua

et al. 2013

Chin. Sci. Bull.

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“…With the advancements in molecular marker technology, marker-assisted selection (MAS) combined with conventional backcrossing has become an effective technique for introducing multiple traits. One example of this approach is the construction of genetic maps for cotton genomes, using SSR markers (e.g., Ulloa and Meredith 2000;Lacape et al 2003;Mei et al 2004;Nguyen et al 2004;Han et al 2004;Lin et al 2005;Yu et al2007;Guo et al 2008;Zhang et al 2009Zhang et al , 2012Sun et al 2012;Yu et al 2013;Wang et al 2013a, b). Other molecular marker systems have also provided valuable tools for genetic dissection of complex traits; For example, complementary DNA (cDNA) -amplified fragment length polymorphism (AFLP) has been applied to detect coding sequence polymorphisms of target genes in a segregating population, so that these transcript polymorphisms can be directly used as genetic markers (e.g., Biezen et al 2000;Lister and Dean 1993;Brugmans et al 2002;Liu et al 2009).…”

Section: Introductionmentioning

confidence: 99%

“…To date, CottonGen has 988 mapped QTL representing 25 traits by using interspecific and intraspecific populations. Researchers have detected QTL associated with fiber properties from both intraspecific populations of G. hirsutum and interspecific crosses between G. hirsutum 9 G. barbadense, as well as their later generations (e.g., Shappley et al 1998;Jiang et al 1998;Yu et al 1998;Kohel et al 2001;Paterson et al 2003;Zhang et al 2003Zhang et al , 2005Zhang et al , 2012Shen et al 2005;Lacape et al 2005;Chee et al 2005;He et al 2006;Wang et al 2006Wang et al , 2013aYu et al 2013). The QTL obtained from interspecific populations accounted for 80 % of the fiber quality QTL.…”

Section: Introductionmentioning

confidence: 99%

Mapping QTL for cotton fiber quality traits using simple sequence repeat markers, conserved intron-scanning primers, and transcript-derived fragments

et al. 2014

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Cotton is an important fiber crop worldwide. Improved fiber quality is a driving force for cotton genetic studies and breeding. A BC 1 population containing 115 individuals from a cross between Gossypium hirsutum cv. CCRI8 and G. barbadense cv. Pima 90-53 was established, and 519 simple sequence repeat (SSR) markers, two conserved intronscanning primers (CISPs), and transcript-derived fragments (TDFs) amplified from 156 ApoI/TaqI selective primer combinations were used to construct a genetic linkage map. The map included 579 markers distributed on 56 linkage groups. Accounting for 83.4 % of the cotton genome, it covered 4,168.72 cM, with an average distance of 7.19 cM between markers. Lengths of the linkage groups ranged from 1.25 to 255.79 cM, with 2 to 44 markers per group. Of these 56 groups, 43 were assigned to 26 chromosomes, with the remaining 13 unknown. Based on this newly constructed map of tetraploid cotton, we performed quantitative trait loci (QTL) mapping and analysis of fiber quality traits from the BC 1 and its derived BC 1 F 2 lines. A total of 44 fiber quality QTL were detected on 17 chromosomes, explaining 7.72-23.73 % of the phenotypic variation. Pima 90-53 offered 13 QTL alleles with positive additive effects and four with negative additive effects for fiber quality traits. The results from this study may provide useful information for breeders to transfer desirable fiber traits from cotton types, such as the Sea Island strain, to Upland cotton that is primarily cultivated currently.

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QTL analysis of agronomic, fiber quality, and abiotic stress tolerance traits in a recombinant inbred population of pima cotton

Abdelraheem

Fang

Dever³

et al. 2020

Crop Science

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Pima cotton (Gossypium barbadense L.) is grown for its superior fiber quality in four U.S. states and in several other countries. However, there is a lack of information on major and stable quantitative trait loci (QTL) for fiber quality and agronomic traits and abiotic stress tolerance across different environments. In this study, a genetic linkage map based on 403 simple sequence repeat (SSR) markers was developed for the Pima S‐6/89590 intraspecific mapping population consisting of 161 recombinant inbred lines (RILs). Through the evaluation of the RIL population in seven field tests for agronomic traits and fiber quality in the four pima cotton‐growing U.S. states and four greenhouse tests for drought and salinity tolerance, a total of 156 QTL were detected. Eight QTL clusters and four hotspots were further identified, and many of the QTL and their clusters and hotspots were consistent with previous studies that will be useful for marker‐assisted selection. Using a basic local alignment search tool (BLAST) search against the sequenced Pima 3‐79 genome, 26, 16, 32, 14, 127, and 14 candidate genes were predicted for 15 stable QTL on six chromosomes (chromosomes 3, 10, 12, 19, 21, and 24, respectively), for fiber quality traits and abiotic stress tolerance. These genomic regions were rich in genes related to fiber developments and abiotic stress responses. This study provides important information on new and stable QTL across environments for developing superior American pima cotton.

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Genetic mapping and quantitative trait locus analysis of fiber quality traits using a three-parent composite population in upland cotton (Gossypium hirsutum L.)

Cited by 99 publications

References 32 publications

Construction of a linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.)

Construction of a linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.)

Mapping QTL for cotton fiber quality traits using simple sequence repeat markers, conserved intron-scanning primers, and transcript-derived fragments

QTL analysis of agronomic, fiber quality, and abiotic stress tolerance traits in a recombinant inbred population of pima cotton

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