Genetic diversity revealed via molecular analysis of moroccan and foreign plum (Prunus domestica; Prunus salicina) genotypes from an ex-situ collection

Hamdani, Anas; Bouda, Said; Houmanat, Karim; Outghouliast, Hakim; Razouk, Rachid; Adiba, Atman; Charafi, Jamal

doi:10.1007/s42535-022-00463-7

Cited by 5 publications

(3 citation statements)

References 27 publications

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“…The variation of genetic distances (0.113-0.520) was similar to the results of Hamdani et al (2022), who reported values of genetic distances ranged between 0.136 and 0.619 with a mean of 0.365 in plum (Prunus salicina L) genotypes using 20 ISSR primers. Table 6.…”

Section: Table 5 Genetic Distances Between the Studied Strawberry Tre...supporting

confidence: 85%

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Assessment of Genetic Diversity of Wild Strawberry Tree (Arbutus Unedo L.) Genotypes From Morocco Using Issr Markers

ZITOUNI,

KABIRI,

HANINE

et al. 2023

AgricultForest

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The aim of this study was to evaluate the genetic diversity among 36 wild strawberry tree (Arbutus unedo L.) genotypes belonging to different altitude and geographical origins, using 16 ISSR (Inter Simple Sequence Repeats) markers. Results revealed that ISSR primers produced a total of 344 bands, of which 94.1% were polymorphic, indicating a high level of genetic variation among the studied populations. The mean values of polymorphism information content (PIC), efective multiplex ratio (EMR), resolving power (Rp) and marker index (MI) were 0.34, 19.13, 23.46 and 6.45, respectively. The total gene diversity (Ht), gene diversity within populations (Hs) and total genetic differentiation coefficient among the populations (Gst) values were 0.33, 0.15 and 0.50, respectively. The genetic distance between all pairwise combinations of the genotypes ranged from 0.113 to 0.512. The cluster analysis revealed three main groups and which are subdivided into eight subgroups and a two independant branches. Therefore, the grouping of strawberry tree genotypes was independent of their geographical origins and altitude with exception for the genotypes belonging to Bin El-ouidane and Laanoucer populations. The results showed that ISSR markers are suitable tools for the evaluation of genetic diversity among strawberry tree genotypes. The data of this work will be useful for strawberry tree breeding programs and conservation strategies.

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Section: Table 5 Genetic Distances Between the Studied Strawberry Tre...supporting

confidence: 85%

“…For Vaccinium myrtillus populations, the mean value of PIC obtained by the same researchers was much lower (0.05) than our results. In plum (Prunus salicina L) genotypes, Hamdani et al (2022) reported similar average value of PIC (0.34) using 20 ISSR primers.…”

Section: Results and Discussion Issr Polymorphismmentioning

confidence: 77%

Assessment of Genetic Diversity of Wild Strawberry Tree (Arbutus Unedo L.) Genotypes From Morocco Using Issr Markers

ZITOUNI,

KABIRI,

HANINE

et al. 2023

AgricultForest

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“…The crucial step to conserve biodiversity in crops is the analysis of genetic variation in germplasm collections [ 11 ]. Molecular biology methods, such as RAPD [ 12 ], RFLP [ 11 , 13 , 14 ], ISSR [ 15 ] and SSR [ 1 , 3 , 5 , 6 , 10 , 11 , 16 , 17 , 18 , 19 , 20 , 21 , 22 , 23 , 24 , 25 , 26 , 27 , 28 ] were used for genotyping Prunus domestica species at the genomic level. Prunus domestica is a less-analyzed specie of the Prunoideae subfamily due to its polyploidy [ 16 ].…”

Section: Introductionmentioning

confidence: 99%

Fingerprinting of Plum (Prunus domestica) Genotypes in Lithuania Using SSR Markers

Antanynienė

Šikšnianienė

Stanys

et al. 2023

Plants

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This study’s aim was to evaluate the genetic diversity of European plum (Prunus domestica) cultivars and hybrids in Lithuania using SSR markers. In total, 107 plum genotypes (including 68 European plum cultivars and 39 hybrids) from the genetic resources collection of the Institute of Horticulture of the Lithuanian Research Centre for Agriculture and Forestry (LRCAF IH) were evaluated using nine microsatellite markers (SSRs) previously published and suggested by the European Cooperative Programme for Plant Genetic Resources (ECPGR). Up to six alleles per locus with each primer pair were generated for some genotypes due to the hexaploidy of plums. The number of alleles in each primer ranged from 18 to 30, with an average of 24.33. The highest number of alleles was generated with the PacA33 primer pair (30). The most informative primer, according to the PIC value, was BPPCT007. Sixty-two unique alleles (representing 39.5% of all polymorphic alleles) have been detected in the plum germplasm developed in Lithuania. According to UPGMA cluster analysis, 58 European plum genotypes were separated into eight groups without any relation to fruit color or shape. By genetic diversity (UPGMA) and structure (Bayesian) analysis, European plum hybrids were grouped into clusters according to their pedigree.

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Morphological, biochemical, and molecular evaluation of genetic diversity in different plum genotypes (Prunus domestica L.)

Sümbül,

Yildiz,

Yaman

et al. 2023

Genet Resour Crop Evol

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Genetic diversity revealed via molecular analysis of moroccan and foreign plum (Prunus domestica; Prunus salicina) genotypes from an ex-situ collection

Cited by 5 publications

References 27 publications

Assessment of Genetic Diversity of Wild Strawberry Tree (Arbutus Unedo L.) Genotypes From Morocco Using Issr Markers

Assessment of Genetic Diversity of Wild Strawberry Tree (Arbutus Unedo L.) Genotypes From Morocco Using Issr Markers

Fingerprinting of Plum (Prunus domestica) Genotypes in Lithuania Using SSR Markers

Morphological, biochemical, and molecular evaluation of genetic diversity in different plum genotypes (Prunus domestica L.)

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