Genetic diversity, population genetic structure, and demographic history of Auxis thazard (Perciformes), Selar crumenophthalmus (Perciformes), Rastrelliger kanagurta (Perciformes) and Sardinella lemuru (Clupeiformes) in Sulu-Celebes Sea inferred by mitochondrial DNA sequences

Pedrosa-Gerasmio, Ivane R.; Agmata, Altair; Santos, Mudjekeewis D.

doi:10.1016/j.fishres.2014.10.006

Cited by 25 publications

(18 citation statements)

References 100 publications

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“…4 ) and unimodal pattern of mismatch distribution ( Fig. 6 ) further support the occurrence of a sudden demographic expansion during recent history of the taxa ( Slatkin & Hudson, 1991 ; Rogers & Harpending, 1992 ; Ferreri, Qu & Han, 2011 ; Kunal et al, 2014 ; Chen et al, 2015 ; Pedrosa-Gerasmio, Agmata & Santos, 2014 ).…”

Section: Discussionsupporting

confidence: 55%

Recent population expansion of longtail tunaThunnus tonggol(Bleeker, 1851) inferred from the mitochondrial DNA markers

KASIM

Jaafar

Piah

et al. 2020

PeerJ

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The population genetic diversity and demographic history of the longtail tuna Thunnus tonggol in Malaysian waters was investigated using mitochondrial DNA D-loop and NADH dehydrogenase subunit 5 (ND5). A total of 203 (D-loop) and 208 (ND5) individuals of T. tonggol were sampled from 11 localities around the Malaysian coastal waters. Low genetic differentiation between populations was found, possibly due to the past demographic history, dispersal potential during egg and larval stages, seasonal migration in adults, and lack of geographical barriers. The gene trees, constructed based on the maximum likelihood method, revealed a single panmictic population with unsupported internal clades, indicating an absence of structure among the populations studied. Analysis on population pairwise comparison ФST suggested the absence of limited gene flow among study sites. Taken all together, high haplotype diversity (D-loop = 0.989–1.000; ND5 = 0.848–0.965), coupled with a low level of nucleotide diversity (D-loop = 0.019–0.025; ND5 = 0.0017–0.003), “star-like” haplotype network, and unimodal mismatch distribution, suggests a recent population expansion for populations of T. tonggol in Malaysia. Furthermore, neutrality and goodness of fit tests supported the signature of a relatively recent population expansion during the Pleistocene epoch. To provide additional insight into the phylogeographic pattern of the species within the Indo-Pacific Ocean, we included haplotypes from GenBank and a few samples from Taiwan. Preliminary analyses suggest a more complex genetic demarcation of the species than an explicit Indian Ocean versus Pacific Ocean delineation.

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Section: Discussionsupporting

confidence: 55%

Recent population expansion of longtail tunaThunnus tonggol(Bleeker, 1851) inferred from the mitochondrial DNA markers

KASIM

Jaafar

Piah

et al. 2020

PeerJ

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“…Bigeye tuna showed divergent clades, which were assumed to have been originated during the last Pleistocene glacial maxima 23 . Fish population expansion during the Pleistocene has been reported in several studies 130 – 133 and may lead to the modification of population structure. We thus encourage continued analyses on albacore by integrating the models of the evolutionary history worldwide.…”

Section: Discussionmentioning

confidence: 95%

Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology

Nikolic

Montes

Lalire³

et al. 2020

Sci Rep

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Albacore tuna (Thunnus alalunga) is an important target of tuna fisheries in the Atlantic and Indian Oceans. The commercial catch of albacore is the highest globally among all temperate tuna species, contributing around 6% in weight to global tuna catches over the last decade. The accurate assessment and management of this heavily exploited resource requires a robust understanding of the species’ biology and of the pattern of connectivity among oceanic regions, yet Indian Ocean albacore population dynamics remain poorly understood and its level of connectivity with the Atlantic Ocean population is uncertain. We analysed morphometrics and genetics of albacore (n = 1,874) in the southwest Indian (SWIO) and southeast Atlantic (SEAO) Oceans to investigate the connectivity and population structure. Furthermore, we examined the species’ dispersal potential by modelling particle drift through major oceanographic features. Males appear larger than females, except in South African waters, yet the length–weight relationship only showed significant male–female difference in one region (east of Madagascar and Reunion waters). The present study produced a genetic differentiation between the southeast Atlantic and southwest Indian Oceans, supporting their demographic independence. The particle drift models suggested dispersal potential of early life stages from SWIO to SEAO and adult or sub-adult migration from SEAO to SWIO.

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“…In contrast, the results obtained here indicated no significant heterogeneity in coI , control region or in rag1 across the highly pelagic species, bigeye populations within the IMA, in concordance with data from Pedrosa‐Geramsio et al . (). Findings also indicated a homogeneous population of bigeye in the Sulu Sea.…”

Section: Discussionmentioning

confidence: 97%

“…Although Pedrosa‐Gerasmio et al . () studied population genetic structure of bigeye scad Selar crumenophthalmus (Bloch 1793), but only focusing in Sulu‐Celebes Sea. Little information concerning the assessment of population genetic structure and genetic diversity in high commercial‐value species such as yellowtail scad Atule mate (Cuvier 1833), bigeye and yellowstripe scad Selaroides leptolepis (Cuvier 1833) in other area of IMA.…”

Section: Introductionmentioning

confidence: 99%

Comparative genetic stock structure in three species of commercially exploited Indo‐Malay Carangidae (Teleosteii, Perciformes)

Jaafar

Taylor

Nor

et al. 2019

Journal of Fish Biology

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We examine genetic structuring in three commercially important species of the teleost family Carangidae from Malaysian waters: yellowtail scad Atule mate, bigeye scad Selar crumenophthalmus and yellowstripe scad Selaroides leptolepis, from the Indo-Malay Archipelago. In view of their distribution across contrasting habitats, we tested the hypothesis that pelagic species display less genetic divergence compared with demersal species, due to their potential to undertake long-distance migrations in oceanic waters. To evaluate population genetic structure, we sequenced two mitochondrial (mt)DNA [650 bp of cytochrome oxidase I (coI), 450 bp of control region (CR)] and one nuclear gene (910 bp of

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Genetic diversity, population genetic structure, and demographic history of Auxis thazard (Perciformes), Selar crumenophthalmus (Perciformes), Rastrelliger kanagurta (Perciformes) and Sardinella lemuru (Clupeiformes) in Sulu-Celebes Sea inferred by mitochondrial DNA sequences

Cited by 25 publications

References 100 publications

Recent population expansion of longtail tunaThunnus tonggol(Bleeker, 1851) inferred from the mitochondrial DNA markers

Recent population expansion of longtail tunaThunnus tonggol(Bleeker, 1851) inferred from the mitochondrial DNA markers

Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology

Comparative genetic stock structure in three species of commercially exploited Indo‐Malay Carangidae (Teleosteii, Perciformes)

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