“…In the present study, sequence variation was determined in regions of ten virulence-associated genes (prnA, ptxA, ptxC, tcfA, fim2, brkA, vag8, ompQ, bapC and cyaA) in a selection of historical and recent UK isolates of B. pertussis, together with the three strains used to produce the UK whole-cell pertussis vaccine, the strain used to produce components for the acellular pertussis vaccine (Tohama-I) and the type strain (18323 T ) of B. pertussis (Tables 3 and 4). The vaccine and type strains were included as reference strains to help identify vaccine and non-vaccine allele types and to increase the probability of identifying polymorphic sites, as the type strain has been shown to be genotypically distinct from other B. pertussis strains (Musser et al, 1986;Gerlach et al, 2001). In B. pertussis isolates from the UK for the period 1920-2002, polymorphism was found in five genes, prnA, ptxA, ptxC, tcfA and fim2.…”