Genetic Diversity Analysis of South and East Asian Duck Populations Using Highly Polymorphic Microsatellite Markers

Seo, Dongwon; Bhuiyan, M. S. A.; Sultana, Hasina; Heo, Jung Min; Lee, Jun Heon

doi:10.5713/ajas.15.0915

Cited by 22 publications

(28 citation statements)

References 28 publications

(41 reference statements)

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Section: Microsatellite Marker and Genotypingmentioning

confidence: 99%

“…Twenty four primer pairs, the PCR reaction conditions and genotyping which used in our present study were followed by Seo et al (2016). Twenty four primer pairs were used in our present study (Seo et al, 2015 (Seo et al, 2016) were used in this study. The genotyping data were used to calculate the basic statistics, such as mean number of alleles (Na), observed and expected heterozygosity (Ho and He), and polymorphic information content (PIC) values were calculated using Cervus (ver 3.0.7) program (Marshall et al, 1998).…”

Section: Microsatellite Marker and Genotypingmentioning

confidence: 99%

“…A phylogenetic (NJ) tree was constructed using 24 MS marker variations for 340 individuals from seven duck populations ( billed duck (Anas zonorhyncha) (Jin et al, 2014;Sultana et al, 2016). Crossbreeding among commercial and native duck varieties usually practice for the development of rapid and quality meat production and as well as better egg production.…”

Section: Phylogenetic Analysis Of Seven Populationsmentioning

confidence: 99%

“…Among Asian indigenous duck breeds, most of the Chinese duck breeds are characterized and discriminated by MS markers (Wu et al, 2008) in the previous studies. Previously, highly polymorphic MS markers were investigated to identify the population structure and genetic diversity of Korean native white duck and Bangladeshi indigenous duck breeds (Seo et al, 2016).…”

Section: Introductionmentioning

confidence: 99%

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Genetic Diversity Analyses of Asian Duck Populations using 24 Microsatellite Markers

Sultana¹,

Seo²,

Choi³

et al. 2017

Korean Journal of Poultry Science

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A total of 340 individuals from seven duck populations were studied using 24 polymorphic microsatellite (MS) markers to identify plumage colors with genetic diversity. The estimated average number of alleles (Na), polymorphic information content (PIC) value, and expected heterozygosity (He) per locus of all populations were 11.5, 0.602, and 0.635, respectively. The calculated population genetic distance (Fst), inbreeding coefficient of individuals within duck populations (Fis), and total inbreeding among populations (Fit) were 0.135, 0.105, and 0.229, respectively. Statistical analyses for each population using 24 marker combinations, revealed that the estimated average number of effective alleles (Ne), observed heterozygosity (Ho), and fixation index of inbreeding within populations (F) were 3.129, 0.505, and 0.104, respectively. The results of genetic distance and phylogenetic analysis revealed that Korean native duck populations were clearly separated from all Bangladeshi duck populations. Moreover, all populations clustered well according to their genetic distance, but could not be clearly separated according to black and white plumage colors or plumage color pattern. The combination of these 24 MS markers can be used for discrimination and determination of the genetic diversity of native duck breeds in further investigations for conservation and special development purposes.

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Section: Microsatellite Marker and Genotypingmentioning

confidence: 99%

Section: Microsatellite Marker and Genotypingmentioning

confidence: 99%

Section: Phylogenetic Analysis Of Seven Populationsmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

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Genetic Diversity Analyses of Asian Duck Populations using 24 Microsatellite Markers

Sultana¹,

Seo²,

Choi³

et al. 2017

Korean Journal of Poultry Science

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“…Протягом останніх десятиліть, найбільш актуальними були дослідження генетичних особливостей та різноманіття великої рогатої худоби, свиней та курей. Качки залишаються недостатньо вивченими серед свійських тварин, тому актуальним є вивчення їх генетичного поліморфізму (Seo et al, 2016;Klenovickij et al, 2016).…”

Section: вступunclassified

Shaoxing breed duck polymorphism by microsatellite loci

Chepiha¹,

Kostenko²,

Doroshenko³

et al. 2018

SMLNUVMBA

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Microsatellite markers are now been widely used for the detection and description of micropopulation processes occurring in the populations of domestic animals for the effects of various factors of breeding pressure. Microsatellite loci distributed throughout eukaryotic genomes, making them the preferred genetic marker for high resolution genetic mapping. In recent years, rapid advances have been made in the development of molecular genetic maps. High-density linkage maps are now available for many farm animals, such as cattle, pigs, and goats. In contrast, mapping studies in avian species are much less advanced except in the chicken. According to FAO about 70% of ducks are bred in China. This country is a leader in growing ducks. The Shaoxing breed is one of the three major duck breeds in China. Ducks of this breed are characterized by high performance. According to the Bureau of Product Quality, the age of maturity (the beginning of egg laying) in these birds occurs at 130-140 days. The characteristics of the Shaoxing breed include the fact that the peak period of laying eggs lasts from eight to ten months. On average, one duck in 500 days gives from 290 to 310 eggs, which is one of the highest rates for egg breeds. That is why the purpose of our study was the microsatellite analysis of two populations of Shaoxing breed with 9 locuses was conducted. The selection of birds for the study were carried out on a duck farms in Zhejiang Generation Biological Science and Technology Co., Ltd. and Zhuji Guowei Poultry Development Co, Ltd., and at the laboratory of the Jjejiang Academy of Sciences Institute. Samples collection and DNA preparation: Venous blood samples were collected from 480 ducks (240 ducks of population I and 240 ducks of population II of the Shaoxing breeds) of both populations into 3 ml tubes containing EDTA as anticoagulant agent. In total of 9 investigated loci in the Shaoxing breed population, only one locus was monomorphic (SMO10). The number of different alleles (Na) for each polymorphic locus ranged from 2 (SMO12) to 13 (APL79, CMO11) in population I and from 2 (APL78, SMO12) to 7 (APL79) in population II. On average, one locus had 5.889 alleles in population I and 3.889 of alleles in the population II. The effective number of alleles (Nе) was 1.735 in population I and 1.599 in population II. The number of alleles and the expected heterozygosity (Hexp) values can provide important information for the discrimination of individuals and breeds. The index of expected heterozygosity in population I was 0.336 and 0.307 in population II. The information index (I) was 0,702 in population I and 0,576 in population II. For each population was found private alleles, in population I 6 alleles and in population II just 4 alleles. The results show high level of polymorphism of the studied populations of ducks. The obtained results can be used in the creation of new lines of ducks.

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Duck Genomics and Biotechnology

Mishra

Naim

2022

Duck Production and Management Strategies

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Genetic Diversity Analysis of South and East Asian Duck Populations Using Highly Polymorphic Microsatellite Markers

Cited by 22 publications

References 28 publications

Genetic Diversity Analyses of Asian Duck Populations using 24 Microsatellite Markers

Genetic Diversity Analyses of Asian Duck Populations using 24 Microsatellite Markers

Shaoxing breed duck polymorphism by microsatellite loci

Duck Genomics and Biotechnology

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